Ss1.1-Pig4-TMW8056C06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCTGGCTCATTAACCGGTTGCCTGGGCTCCGAGACTTGGTGCTGTCGGGCTGCTCATGG ATTGCAGTCTCAGCCCTCTGTAGCTCCAGCTGCCCGCTGCTCCGGACCCTGGATGTCCAG TGGGTAGAAGGACTAAAGGACGCCCAGATGCGGGATCTTCTGTCTCCACCTACGGATAAC AGGCCAGGTCAGATGGATAATCGGAGTAAGCTCCGGAACATCGTGGAGCTGCGTCTTGCT GGCCTGGACATCACCGACGCCTCCCTGCGGCTCATCATTCGCCACATGCCCCTGCTCTCC AAGCTCCACCTCAGTTACTGTAACCATGTCACCGACCAGTCCATCAACCTGCTCACTGCC GTGGGCACCACCACCCGAGACTCCTTAACCGAAATCAACCTTTCAGACTGCAATAAGGTT ACTGACCAGTGCCTGTCCTTCTTCAAACGCTGTGGGAATATCTGTCACATTGACCTGAGG TATTGCAAGCAAGTCACCAAGGAAGGCTGCGAGCAGTTCATAGCCGAAATGTCTGTTAGT GTCCAGTTCGGGTACAAAAACTAGGGTTTTTATTTTCCATTTGGAACTTGGAACAACAGA CCGCAGCACGATTCCATTTTGCAAGTCTGGCCGAGGGAGCAGCCGTTCTGCCGCCCGTTT CAGAGATGAGTGAGCCGGGCGCATTCCTCGGGTCTTTCTGAATCAAAACTGCACTGCTTT CTGGACCATTTCTAAGGCGGCCTTTTATCAAGAAGACATTCCTGTCGAGAGGAAGAGGAT GGACTTGGGAGAAATTTTCTTACTCAAGCATGAGCTGAGGAATTGTTTTTGGCCGTGGTG GTGGTTTTGTCTTGGACACCTTATTCCTGGAAACTTTGGGGGTTTTGGTGTCAGCCTAAA GTGGACCACACACCACATCTGCCGTCTTGACATATTTGTTTGGTTTTGTTACATCTTACA TTATGCAGAACTATTTTTGTACAAATTGTTTAAAAGTTATTTATGCAAGGTTTGAATGCA TACCAGTGTTTTTATTGTTTTGAGATTGCCAACTTTCCTGGTTTCTTTAAAGTAGGCGAG AACTTAACCTGTACTTCATACAAATCCATCTACACATGTGCCCAGATGTGGCAAAGTAGG CTCAGACCTCCCAGGTAAAAGCATGTTTAACTGGAAGTTGAGTGCCTGCTTTGTATGTCA AGAAGTTTAAGCATGTTGTGGGTATATGTAAATTAGAGTCAAAGTGAGACACTTGGCTAA ATTTCCTCTGTATAGAATTCACCTTTTCCTCAAAATTTTAAAATTCCGACTTCAGCCTTT GCACTCAGGAGGGTTGTGCTCCAGCATGAGCTCTTGTACTCTACATAGATCTAATTTCTA CAGTGAGTCAAGAAGTAGAATAAACGATTCAACATAGTCTTTCTTTTCCTTTTTTTTCCT CCTCTCCTTCGAAGTGGAGTTGAGTTCTCGTTTAAGGTTTATAACATGGCTGTTTCCCAG TTGTAAAGTTATGCATTCATAAGTGCCATTGTTGTAAGGTGTTGTTTTCCTAGCCCTTCC CTGACACGGTTTTACCTTTGTTGAATTTGTATAAACAATTGTACAAAAAAAGCAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCTGGCTCATTAACCGGTTGCCTGGGCTCCGAGACTTGGTGCTGTCGGGCTGCTCATGG ATTGCAGTCTCAGCCCTCTGTAGCTCCAGCTGCCCGCTGCTCCGGACCCTGGATGTCCAG TGGGTAGAAGGACTAAAGGACGCCCAGATGCGGGATCTTCTGTCTCCACCTACGGATAAC AGGCCAGGTCAGATGGATAATCGGAGTAAGCTCCGGAACATCGTGGAGCTGCGTCTTGCT GGCCTGGACATCACCGACGCCTCCCTGCGGCTCATCATTCGCCACATGCCCCTGCTCTCC AAGCTCCACCTCAGTTACTGTAACCATGTCACCGACCAGTCCATCAACCTGCTCACTGCC GTGGGCACCACCACCCGAGACTCCTTAACCGAAATCAACCTTTCAGACTGCAATAAGGTT ACTGACCAGTGCCTGTCCTTCTTCAAACGCTGTGGGAATATCTGTCACATTGACCTGAGG TATTGCAAGCAAGTCACCAAGGAAGGCTGCGAGCAGTTCATAGCCGAAATGTCTGTTAGT GTCCAGTTCGGGTACAAAAACTAGGGTTTTTATTTTCCATTTGGAACTTGGAACAACAGA CCGCAGCACGATTCCATTTTGCAAGTCTGGCCGAGGGAGCAGCCGTTCTGCCGCCCGTTT CAGAGATGAGTGAGCCGGGCGCATTCCTCGGGTCTTTCTGAATCAAAACTGCACTGCTTT CTGGACCATTTCTAAGGCGGCCTTTTATCAAGAAGACATTCCTGTCGAGAGGAAGAGGAT GGACTTGGGAGAAATTTTCTTACTCAAGCATGAGCTGAGGAATTGTTTTTGGCCGTGGTG GTGGTTTTGTCTTGGACACCTTATTCCTGGAAACTTTGGGGGTTTTGGTGTCAGCCTAAA GTGGACCACACACCACATCTGCCGTCTTGACATATTTGTTTGGTTTTGTTACATCTTACA TTATGCAGAACTATTTTTGTACAAATTGTTTAAAAGTTATTTATGCAAGGTTTGAATGCA TACCAGTGTTTTTATTGTTTTGAGATTGCCAACTTTCCTGGTTTCTTTAAAGTAGGCGAG AACTTAACCTGTACTTCATACAAATCCATCTACACATGTGCCCAGATGTGGCAAAGTAGG CTCAGACCTCCCAGGTAAAAGCATGTTTAACTGGAAGTTGAGTGCCTGCTTTGTATGTCA AGAAGTTTAAGCATGTTGTGGGTATATGTAAATTAGAGTCAAAGTGAGACACTTGGCTAA ATTTCCTCTGTATAGAATTCACCTTTTCCTCAAAATTTTAAAATTCCGACTTCAGCCTTT GCACTCAGGAGGGTTGTGCTCCAGCATGAGCTCTTGTACTCTACATAGATCTAATTTCTA CAGTGAGTCAAGAAGTAGAATAAACGATTCAACATAGTCTTTCTTTTCCTTTTTTTTCCT CCTCTCCTTCGAAGTGGAGTTGAGTTCTCGTTTAAGGTTTATAACATGGCTGTTTCCCAG TTGTAAAGTTATGCATTCATAAGTGCCATTGTTGTAAGGTGTTGTTTTCCTAGCCCTTCC CTGACACGGTTTTACCTTTGTTGAATTTGTATAAACAATTGTACAAAAAAAGCAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 18-179, + strand, RNAz p=0.915701 | |
| 800-916, - strand, RNAz p=0.66963 | |
| 1102-1212, - strand, RNAz p=0.811247 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 18-179, + strand, RNAz p=0.915701 | |
| 800-916, - strand, RNAz p=0.66963 | |
| 1102-1212, - strand, RNAz p=0.811247 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 18-179, gnl|bosTau2|chr29 (36363615-36363455) | |
| 18-179, gnl|canFam2|chr18 (53209278-53209149) | |
| 18-179, gnl|danRer3|chrUn (13440482-13440611) | |
| 18-179, gnl|dasNov1|scaffold_19340 (10956-10827) | |
| 18-179, gnl|echTel1|scaffold_299274 (4248-4119) | |
| 18-179, gnl|fr1|chrUn (128338290-128338419) | |
| 18-179, gnl|galGal2|chr15 (5432932-5432804) | |
| 18-179, gnl|hg17|chr11 (66777495-66777624) | |
| 18-179, gnl|Hg17|chr11 (66777493-66777653) | |
| 18-179, gnl|loxAfr1|scaffold_47374 (4033-4162) | |
| 18-179, gnl|mm7|chr19 (4215869-4215740) | |
| 18-179, gnl|Mm7|chr19 (4215869-4215709) | |
| 18-179, gnl|monDom2|scaffold_107 (1863645-1863516) | |
| 18-179, gnl|oryCun1|scaffold_208049 (76309-76436) | |
| 18-179, gnl|panTro1|chr9 (68033804-68033933) | |
| 18-179, gnl|rheMac2|chr14 (7211331-7211202) | |
| 18-179, gnl|rn3|chr1 (207061992-207061863) | |
| 18-179, gnl|tetNig1|chr1 (7078665-7078794) | |
| 18-179, gnl|xenTro1|scaffold_501 (909472-909339) | |
| 185-406, gnl|bosTau2|chr17 (28438997-28438776) | |
| 185-406, gnl|canFam2|chr26 (10758431-10758184) | |
| 185-406, gnl|danRer3|chrUn (13442917-13442694) | |
| 185-406, gnl|dasNov1|scaffold_4820 (6368-6125) | |
| 185-406, gnl|echTel1|scaffold_257283 (1220-1002) | |
| 185-406, gnl|fr1|chrUn (42012747-42012981) | |
| 185-406, gnl|galGal2|chr15 (5431864-5432103) | |
| 185-406, gnl|hg17|chr12 (120340373-120340619) | |
| 185-406, gnl|Hg17|chr12 (120340601-120340380) | |
| 185-406, gnl|loxAfr1|scaffold_67752 (3945-3699) | |
| 185-406, gnl|mm7|chr5 (122112652-122112896) | |
| 185-406, gnl|Mm7|chr5 (122112878-122112657) | |
| 185-406, gnl|monDom2|scaffold_97 (1594032-1594278) | |
| 185-406, gnl|oryCun1|scaffold_124276 (4340-4580) | |
| 185-406, gnl|panTro1|chrUn_random (16588838-16589084) | |
| 185-406, gnl|rheMac2|chr11 (122523103-122523349) | |
| 185-406, gnl|rn3|chr12 (34657810-34657566) | |
| 185-406, gnl|tetNig1|chr4 (1628811-1628586) | |
| 185-406, gnl|xenTro1|scaffold_501 (908494-908740) | |
| 600-1611, gnl|bosTau2|chr17 (28434086-28433076) | |
| 600-1611, gnl|Hg17|chr12 (120330703-120329706) | |
| 600-1611, gnl|Mm7|chr5 (122105816-122104890) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 18-179, gnl|bosTau2|chr29 (36363615-36363455) | |
| 18-179, gnl|canFam2|chr18 (53209278-53209149) | |
| 18-179, gnl|danRer3|chrUn (13440482-13440611) | |
| 18-179, gnl|dasNov1|scaffold_19340 (10956-10827) | |
| 18-179, gnl|echTel1|scaffold_299274 (4248-4119) | |
| 18-179, gnl|fr1|chrUn (128338290-128338419) | |
| 18-179, gnl|galGal2|chr15 (5432932-5432804) | |
| 18-179, gnl|hg17|chr11 (66777495-66777624) | |
| 18-179, gnl|Hg17|chr11 (66777493-66777653) | |
| 18-179, gnl|loxAfr1|scaffold_47374 (4033-4162) | |
| 18-179, gnl|mm7|chr19 (4215869-4215740) | |
| 18-179, gnl|Mm7|chr19 (4215869-4215709) | |
| 18-179, gnl|monDom2|scaffold_107 (1863645-1863516) | |
| 18-179, gnl|oryCun1|scaffold_208049 (76309-76436) | |
| 18-179, gnl|panTro1|chr9 (68033804-68033933) | |
| 18-179, gnl|rheMac2|chr14 (7211331-7211202) | |
| 18-179, gnl|rn3|chr1 (207061992-207061863) | |
| 18-179, gnl|tetNig1|chr1 (7078665-7078794) | |
| 18-179, gnl|xenTro1|scaffold_501 (909472-909339) | |
| 185-406, gnl|bosTau2|chr17 (28438997-28438776) | |
| 185-406, gnl|canFam2|chr26 (10758431-10758184) | |
| 185-406, gnl|danRer3|chrUn (13442917-13442694) | |
| 185-406, gnl|dasNov1|scaffold_4820 (6368-6125) | |
| 185-406, gnl|echTel1|scaffold_257283 (1220-1002) | |
| 185-406, gnl|fr1|chrUn (42012747-42012981) | |
| 185-406, gnl|galGal2|chr15 (5431864-5432103) | |
| 185-406, gnl|hg17|chr12 (120340373-120340619) | |
| 185-406, gnl|Hg17|chr12 (120340601-120340380) | |
| 185-406, gnl|loxAfr1|scaffold_67752 (3945-3699) | |
| 185-406, gnl|mm7|chr5 (122112652-122112896) | |
| 185-406, gnl|Mm7|chr5 (122112878-122112657) | |
| 185-406, gnl|monDom2|scaffold_97 (1594032-1594278) | |
| 185-406, gnl|oryCun1|scaffold_124276 (4340-4580) | |
| 185-406, gnl|panTro1|chrUn_random (16588838-16589084) | |
| 185-406, gnl|rheMac2|chr11 (122523103-122523349) | |
| 185-406, gnl|rn3|chr12 (34657810-34657566) | |
| 185-406, gnl|tetNig1|chr4 (1628811-1628586) | |
| 185-406, gnl|xenTro1|scaffold_501 (908494-908740) | |
| 600-1611, gnl|bosTau2|chr17 (28434086-28433076) | |
| 600-1611, gnl|Hg17|chr12 (120330703-120329706) | |
| 600-1611, gnl|Mm7|chr5 (122105816-122104890) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| spl (0.286369) | |
| lnt (0.284616) | |
| fce (0.271592) | |
| eje (0.197668) | |
| fty (0.17584) | |
| ill (0.175593) | |
| eye (0.170503) | |
| cut (0.169924) | |
| cje (0.165235) | |
| fat (0.147427) | |
| sug (0.127291) | |
| med (0.116252) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.286369) | |
| lnt (0.284616) | |
| fce (0.271592) | |
| eje (0.197668) | |
| fty (0.17584) | |
| ill (0.175593) | |
| eye (0.170503) | |
| cut (0.169924) | |
| cje (0.165235) | |
| fat (0.147427) | |
| sug (0.127291) | |
| med (0.116252) |