Non-Coding RNA Search

Ss1.1-Pig4-TMW8056C17.5

Sequence:


               
               TCCGTTTTTAGGAAGTTTTGTTTGTTTAGGATGTTTTCAACATTAACCAATTTCATGCCA
AAGTTTTTCTGTTTTTGAGGAATTGTCTGAATTTGGGACAAAACAGTTTCATGTAAACCA
GCTTTGCAAAATTTTCCAACCCTTCAAATGAGTTTTTTGTCCCTTCGAATGAATTGCCTT
ATTCTGAGCAGAGAGCTGTTAATGCCCAAGCTAGGTTTTTCACTTCCCCAACACCAACAT
ACTTTTTATCTTATTTTGCCAGGCTGGTGCAAAGTAATTAAAGATGTCAATCAGAAATGT
TAATGAGATACCAGTTTTGTAAATCCCACCTATATTTAGCAGCACCTCATGTAGTTATTT
TTTGGTAGCATCTGGTAGAGTGTAGAGTGTTACAGCCAGTAGATTGTTTAAATATCTTTA
GTAGGGCAGTAAGAGTTAATATTGAGTCGAGCTTTTACCAGGTATTCTCTATAGTTTCGA
TGAAAAAAAAAAATCACTGCTGGTGGCACAGCTATCTGCCTGTTTCTTATGCTTTTAAAC
AAAGTTATTGGATAGCATTGCAATTTGGGAGTCCTGATCTGCCTTATTTAGTGGTCTGAA
TGATCATTAGTATGTTGGAAGTTTGGATGCTCTGTTACTGGAATCTTTGACTACTGGCTG
TGTTATATGGTTGGTATAAAGCTATGTGTGTAATCAGCAGGCTTATTTGTTGCACTCGGT
CAGCTTTAATTGTTCTGTATTATATAAAGATAAGTTTATTCAACAATAAATCTGCAGAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCGTTTTTAGGAAGTTTTGTTTGTTTAGGATGTTTTCAACATTAACCAATTTCATGCCA
AAGTTTTTCTGTTTTTGAGGAATTGTCTGAATTTGGGACAAAACAGTTTCATGTAAACCA
GCTTTGCAAAATTTTCCAACCCTTCAAATGAGTTTTTTGTCCCTTCGAATGAATTGCCTT
ATTCTGAGCAGAGAGCTGTTAATGCCCAAGCTAGGTTTTTCACTTCCCCAACACCAACAT
ACTTTTTATCTTATTTTGCCAGGCTGGTGCAAAGTAATTAAAGATGTCAATCAGAAATGT
TAATGAGATACCAGTTTTGTAAATCCCACCTATATTTAGCAGCACCTCATGTAGTTATTT
TTTGGTAGCATCTGGTAGAGTGTAGAGTGTTACAGCCAGTAGATTGTTTAAATATCTTTA
GTAGGGCAGTAAGAGTTAATATTGAGTCGAGCTTTTACCAGGTATTCTCTATAGTTTCGA
TGAAAAAAAAAAATCACTGCTGGTGGCACAGCTATCTGCCTGTTTCTTATGCTTTTAAAC
AAAGTTATTGGATAGCATTGCAATTTGGGAGTCCTGATCTGCCTTATTTAGTGGTCTGAA
TGATCATTAGTATGTTGGAAGTTTGGATGCTCTGTTACTGGAATCTTTGACTACTGGCTG
TGTTATATGGTTGGTATAAAGCTATGTGTGTAATCAGCAGGCTTATTTGTTGCACTCGGT
CAGCTTTAATTGTTCTGTATTATATAAAGATAAGTTTATTCAACAATAAATCTGCAGAGA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               194-780, gnl|bosTau2|chr11 (16016877-16017478)
               

               
               194-780, gnl|Hg17|chr2 (38883019-38882400)
               

               
               194-780, gnl|Mm7|chr17 (78496373-78495801)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               194-780, gnl|bosTau2|chr11 (16016877-16017478)
               

               
               194-780, gnl|Hg17|chr2 (38883019-38882400)
               

               
               194-780, gnl|Mm7|chr17 (78496373-78495801)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               mgp (0.230681)
               

               
               mgm (0.180343)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               spc (0.113366)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               mgm (0.180343)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               spc (0.113366)

	194-780, gnl\|bosTau2\|chr11 (16016877-16017478)
	194-780, gnl\|Hg17\|chr2 (38883019-38882400)
	194-780, gnl\|Mm7\|chr17 (78496373-78495801)

	mgp (0.230681)
	mgm (0.180343)
	bfe (0.149858)
	liv (0.146284)
	spc (0.113366)