Ss1.1-Pig4-TMW8056C20.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAAATTTAATTCAATTTCAATTAGTGGATACCATATGCAGGAAGCAGGAGCCGATGCCA TTCTGGAGCTGGCCTATACTATTGCAGATGGATTGGAATACTGTAGAACTGGACTCCAAG CTGGCCTGACAATTGATGAGTTTGCACCAAGGTTGTCTTTCTTCTGGGGAATTGGGATGA ACTTTTATATGGAAATAGCAAAAATGAGAGCTGGGAGAAGACTCTGGGCCCATTTAATAG AGAAGATGTTTCGGCCTAAAAACTCTAAATCTCTTCTTCTAAGAGCACATTGTCAGACAT CAGGATGGTCACTTACTGAGCAAGATCCTTATAATAACATCATTCGTACTACAGTAGAAG CAATGGCAGCGGTGTTTGGAGGAACTCAGTCTTTGCACACAAATTCTTTTGATGAAGCCC TGGGTTTGCCAACGGTGAAAAGTGCTAGAATTGCCAGGAACACACAAATCATTATTCAAG AAGAATCTGGGATTCCCAAAGTGGCCGATCCTTGGGGAGGTTCATATATGATGGAATCAC TCACAAACGACGTTTATGATGCTGCCTTGAAGCTCATTAATGAAATTGAAGAGATGGGTG GAATGGCCAAAGCTGTGGCAGAGGGAATACCTAAACTTCGAATTGAAGAATGTGCTGCCC GAAGACAAGCTAGAATAGATTCTGGTTCTGAAGTAATTGTTGGAGTAAATAAATACCAGT TGGAAAAAGAAGAATCTGTGGAGGTTTTGGCAATTGATAATACTTCAGTGCGCAACAAGC AGATTGAAAAACTTAAGAAGGTCAAATCCAGCAGGGATCAAGCTTTGGCTGAACGGTGCC TCACTGCCCTCACTGCCTGTGCTGCCAGTGGAGATGGGAATATTCTTGCTCTTGCAGTAG AGGCAACTCGTGCAAGATGTACAGTTGGAGAAATCACAGATGCCATGAAAAAGGTATTTG GTGAACATAAAGCTAATGATCGTATGGTGAGTGGAGCCTATCGCCAGGAATTTGGAGAAA GTAAAGAGATATCATTTGCTATCAAGAGGGTTCATAAGTTCATGGAACGTGAAGGTCGCA GACCTCGTCTTCTTGTGGCAAAAATGGGACAAGATGGACATGACAGAGGAGCAAAAGTTA TTGCTACAGGATTTGCCGATCTTGGTTTCGATGTGGATATTGGTCCTCTTTTTCAGACTC CCCGGGAAGTGGCCCAACAGGCTGTGGATGCAGATGTGCATGCAGTGGGTGTGAGCACAC TTGCTGCGGGGCATAAAACCCTGGTTCCCGAGCTCATCAAGGAACTTAGCACCCTCGGAC GGCCAGATATTCTCGTCATTTGTGGAGGGGTGATACCACCACAGGATTATGAATTCTTAT TTGAAGTCGGCGTTTCCAATGTGTTTGGTCCTGGGACTCGAATTCCAAAGGCTGCTGTTC AAGTGCTTAATGACATTGAGAAGTGTTTGGAAAAGAAGCAGCAATCTATGTAACATCCTG TCTTTGTTTTTGCTTTTTTCAAAAATATTCTTTCAATTATGATCAAAGAAGAAAGTGAAG CTATGTCTGCAAATTATTCAGCACTTGATATGTGCTTTCCTGAAAGCTTAACATTAAAAT ACTTGACTTATAAGACTGTCATGCTATAAGTATGTATAGTTCCATTTTAATTTTAAAAAT CAAAAAAATTATCCTTAAAACTCTATAATATATGCTCAATACTTTATGAGAAACTCTAGA CAAAGTTATTTTTTTAATTATGATATTTATTTGAAATATTTCTTATAAATCTATTTACTA TTTTAAGAATATCTTAAGAATATCTTTCGGAGTTCCCATCGTGGCTCAGCAGTTAACGAA CCTGACTAGCATCCATGAGGACTCGGGTTTGATCCCTGGCCTCACTCTGTGGGTTAAGGA TCTGGCATTGTTGTGAGCTGTGGTGTAGGTCACAGACATGGCTCGGATCCAGTGTTGCTG TGACTCTGGTGTAGGCTGGCAACTACAGCTCCGGTTGGACCCCTAGCCTGGGAACCTTCA TGTGCTGCAAGTATGGCCCTAAAAAGACAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAAATTTAATTCAATTTCAATTAGTGGATACCATATGCAGGAAGCAGGAGCCGATGCCA TTCTGGAGCTGGCCTATACTATTGCAGATGGATTGGAATACTGTAGAACTGGACTCCAAG CTGGCCTGACAATTGATGAGTTTGCACCAAGGTTGTCTTTCTTCTGGGGAATTGGGATGA ACTTTTATATGGAAATAGCAAAAATGAGAGCTGGGAGAAGACTCTGGGCCCATTTAATAG AGAAGATGTTTCGGCCTAAAAACTCTAAATCTCTTCTTCTAAGAGCACATTGTCAGACAT CAGGATGGTCACTTACTGAGCAAGATCCTTATAATAACATCATTCGTACTACAGTAGAAG CAATGGCAGCGGTGTTTGGAGGAACTCAGTCTTTGCACACAAATTCTTTTGATGAAGCCC TGGGTTTGCCAACGGTGAAAAGTGCTAGAATTGCCAGGAACACACAAATCATTATTCAAG AAGAATCTGGGATTCCCAAAGTGGCCGATCCTTGGGGAGGTTCATATATGATGGAATCAC TCACAAACGACGTTTATGATGCTGCCTTGAAGCTCATTAATGAAATTGAAGAGATGGGTG GAATGGCCAAAGCTGTGGCAGAGGGAATACCTAAACTTCGAATTGAAGAATGTGCTGCCC GAAGACAAGCTAGAATAGATTCTGGTTCTGAAGTAATTGTTGGAGTAAATAAATACCAGT TGGAAAAAGAAGAATCTGTGGAGGTTTTGGCAATTGATAATACTTCAGTGCGCAACAAGC AGATTGAAAAACTTAAGAAGGTCAAATCCAGCAGGGATCAAGCTTTGGCTGAACGGTGCC TCACTGCCCTCACTGCCTGTGCTGCCAGTGGAGATGGGAATATTCTTGCTCTTGCAGTAG AGGCAACTCGTGCAAGATGTACAGTTGGAGAAATCACAGATGCCATGAAAAAGGTATTTG GTGAACATAAAGCTAATGATCGTATGGTGAGTGGAGCCTATCGCCAGGAATTTGGAGAAA GTAAAGAGATATCATTTGCTATCAAGAGGGTTCATAAGTTCATGGAACGTGAAGGTCGCA GACCTCGTCTTCTTGTGGCAAAAATGGGACAAGATGGACATGACAGAGGAGCAAAAGTTA TTGCTACAGGATTTGCCGATCTTGGTTTCGATGTGGATATTGGTCCTCTTTTTCAGACTC CCCGGGAAGTGGCCCAACAGGCTGTGGATGCAGATGTGCATGCAGTGGGTGTGAGCACAC TTGCTGCGGGGCATAAAACCCTGGTTCCCGAGCTCATCAAGGAACTTAGCACCCTCGGAC GGCCAGATATTCTCGTCATTTGTGGAGGGGTGATACCACCACAGGATTATGAATTCTTAT TTGAAGTCGGCGTTTCCAATGTGTTTGGTCCTGGGACTCGAATTCCAAAGGCTGCTGTTC AAGTGCTTAATGACATTGAGAAGTGTTTGGAAAAGAAGCAGCAATCTATGTAACATCCTG TCTTTGTTTTTGCTTTTTTCAAAAATATTCTTTCAATTATGATCAAAGAAGAAAGTGAAG CTATGTCTGCAAATTATTCAGCACTTGATATGTGCTTTCCTGAAAGCTTAACATTAAAAT ACTTGACTTATAAGACTGTCATGCTATAAGTATGTATAGTTCCATTTTAATTTTAAAAAT CAAAAAAATTATCCTTAAAACTCTATAATATATGCTCAATACTTTATGAGAAACTCTAGA CAAAGTTATTTTTTTAATTATGATATTTATTTGAAATATTTCTTATAAATCTATTTACTA TTTTAAGAATATCTTAAGAATATCTTTCGGAGTTCCCATCGTGGCTCAGCAGTTAACGAA CCTGACTAGCATCCATGAGGACTCGGGTTTGATCCCTGGCCTCACTCTGTGGGTTAAGGA TCTGGCATTGTTGTGAGCTGTGGTGTAGGTCACAGACATGGCTCGGATCCAGTGTTGCTG TGACTCTGGTGTAGGCTGGCAACTACAGCTCCGGTTGGACCCCTAGCCTGGGAACCTTCA TGTGCTGCAAGTATGGCCCTAAAAAGACAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 75 entry(ies) | More info |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
| 1-153, gnl|bosTau2|chr23 (19942206-19942358) | |
| 1-153, gnl|canFam2|chr12 (20334338-20334550) | |
| 1-153, gnl|echTel1|scaffold_316686 (34829-35036) | |
| 1-153, gnl|fr1|chrUn (88090280-88090504) | |
| 1-153, gnl|galGal2|chr3 (106687646-106687428) | |
| 1-153, gnl|hg17|chr6 (49531735-49531950) | |
| 1-153, gnl|Hg17|chr6 (49531902-49531750) | |
| 1-153, gnl|mm7|chr17 (38982141-38981932) | |
| 1-153, gnl|Mm7|chr17 (38981972-38982124) | |
| 1-153, gnl|monDom2|scaffold_0 (189582935-189582723) | |
| 1-153, gnl|oryCun1|scaffold_102710 (14259-14467) | |
| 1-153, gnl|panTro1|chr5_random (29727410-29727193) | |
| 1-153, gnl|rheMac2|chr4 (49200018-49200232) | |
| 1-153, gnl|rn3|chr9 (16084729-16084938) | |
| 1-153, gnl|tetNig1|chr14 (7755258-7755049) | |
| 1-153, gnl|xenTro1|scaffold_996 (258841-258640) | |
| 324-572, gnl|bosTau2|chr23 (19945284-19945532) | |
| 324-572, gnl|canFam2|chr12 (20331574-20331771) | |
| 324-572, gnl|dasNov1|scaffold_10018 (82461-82658) | |
| 324-572, gnl|echTel1|scaffold_316686 (30624-30791) | |
| 324-572, gnl|fr1|chrUn (88089103-88089300) | |
| 324-572, gnl|galGal2|chr3 (106690552-106690355) | |
| 324-572, gnl|hg17|chr6 (49527137-49527334) | |
| 324-572, gnl|Hg17|chr6 (49527386-49527138) | |
| 324-572, gnl|loxAfr1|scaffold_8241 (18950-19147) | |
| 324-572, gnl|mm7|chr17 (38987922-38987725) | |
| 324-572, gnl|Mm7|chr17 (38987671-38987919) | |
| 324-572, gnl|monDom2|scaffold_0 (189588197-189588000) | |
| 324-572, gnl|oryCun1|scaffold_195602 (56116-56313) | |
| 324-572, gnl|panTro1|chr5_random (29731995-29731798) | |
| 324-572, gnl|rheMac2|chr4 (49193843-49194040) | |
| 324-572, gnl|rn3|chr9 (16079038-16079235) | |
| 324-572, gnl|tetNig1|chr14 (7756237-7756040) | |
| 324-572, gnl|xenTro1|scaffold_996 (261407-261210) | |
| 684-802, gnl|bosTau2|chr23 (19955425-19955543) | |
| 684-802, gnl|canFam2|chr12 (20327773-20327931) | |
| 684-802, gnl|danRer3|chrNA (160125579-160125451) | |
| 684-802, gnl|dasNov1|scaffold_10018 (80755-80930) | |
| 684-802, gnl|echTel1|scaffold_316686 (26947-27121) | |
| 684-802, gnl|fr1|chrUn (88087862-88088018) | |
| 684-802, gnl|galGal2|chr3 (106693649-106693496) | |
| 684-802, gnl|hg17|chr6 (49523332-49523498) | |
| 684-802, gnl|Hg17|chr6 (49523458-49523340) | |
| 684-802, gnl|loxAfr1|scaffold_8241 (14993-15168) | |
| 684-802, gnl|mm7|chr17 (38993553-38993379) | |
| 684-802, gnl|Mm7|chr17 (38993427-38993545) | |
| 684-802, gnl|monDom2|scaffold_0 (189598035-189597861) | |
| 684-802, gnl|oryCun1|scaffold_195602 (50767-50944) | |
| 684-802, gnl|panTro1|chr5_random (29609359-29609525) | |
| 684-802, gnl|rheMac2|chr4 (49190213-49190379) | |
| 684-802, gnl|rn3|chr9 (16075017-16075187) | |
| 684-802, gnl|tetNig1|chr14 (7757223-7757075) | |
| 684-802, gnl|xenTro1|scaffold_996 (266013-265868) | |
| 1047-1196, gnl|bosTau2|chr23 (19961158-19961307) | |
| 1047-1196, gnl|canFam2|chr12 (20320477-20320622) | |
| 1047-1196, gnl|danRer3|chrNA (160153259-160153114) | |
| 1047-1196, gnl|dasNov1|scaffold_49903 (4335-4480) | |
| 1047-1196, gnl|echTel1|scaffold_316686 (7804-7949) | |
| 1047-1196, gnl|fr1|chrUn (88085809-88085950) | |
| 1047-1196, gnl|galGal2|chr3 (106700664-106700524) | |
| 1047-1196, gnl|hg17|chr6 (49515871-49516016) | |
| 1047-1196, gnl|Hg17|chr6 (49516027-49515878) | |
| 1047-1196, gnl|loxAfr1|scaffold_8241 (11682-11828) | |
| 1047-1196, gnl|mm7|chr17 (38999130-38998990) | |
| 1047-1196, gnl|Mm7|chr17 (38998977-38999126) | |
| 1047-1196, gnl|monDom2|scaffold_0 (189606555-189606415) | |
| 1047-1196, gnl|oryCun1|scaffold_195602 (46160-46304) | |
| 1047-1196, gnl|panTro1|chr5_random (29601883-29602028) | |
| 1047-1196, gnl|rheMac2|chr4 (49181069-49181214) | |
| 1047-1196, gnl|rn3|chr9 (16069784-16069924) | |
| 1047-1196, gnl|tetNig1|chr14 (7758101-7757962) | |
| 1047-1196, gnl|xenTro1|scaffold_996 (283117-282977) | |
| 1361-1810, gnl|bosTau2|chr23 (19969305-19969751) | |
| 1361-1810, gnl|Hg17|chr6 (49507532-49507064) | |
| 1361-1810, gnl|Mm7|chr17 (39001213-39001665) |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-153, gnl|bosTau2|chr23 (19942206-19942358) | |
| 1-153, gnl|canFam2|chr12 (20334338-20334550) | |
| 1-153, gnl|echTel1|scaffold_316686 (34829-35036) | |
| 1-153, gnl|fr1|chrUn (88090280-88090504) | |
| 1-153, gnl|galGal2|chr3 (106687646-106687428) | |
| 1-153, gnl|hg17|chr6 (49531735-49531950) | |
| 1-153, gnl|Hg17|chr6 (49531902-49531750) | |
| 1-153, gnl|mm7|chr17 (38982141-38981932) | |
| 1-153, gnl|Mm7|chr17 (38981972-38982124) | |
| 1-153, gnl|monDom2|scaffold_0 (189582935-189582723) | |
| 1-153, gnl|oryCun1|scaffold_102710 (14259-14467) | |
| 1-153, gnl|panTro1|chr5_random (29727410-29727193) | |
| 1-153, gnl|rheMac2|chr4 (49200018-49200232) | |
| 1-153, gnl|rn3|chr9 (16084729-16084938) | |
| 1-153, gnl|tetNig1|chr14 (7755258-7755049) | |
| 1-153, gnl|xenTro1|scaffold_996 (258841-258640) | |
| 324-572, gnl|bosTau2|chr23 (19945284-19945532) | |
| 324-572, gnl|canFam2|chr12 (20331574-20331771) | |
| 324-572, gnl|dasNov1|scaffold_10018 (82461-82658) | |
| 324-572, gnl|echTel1|scaffold_316686 (30624-30791) | |
| 324-572, gnl|fr1|chrUn (88089103-88089300) | |
| 324-572, gnl|galGal2|chr3 (106690552-106690355) | |
| 324-572, gnl|hg17|chr6 (49527137-49527334) | |
| 324-572, gnl|Hg17|chr6 (49527386-49527138) | |
| 324-572, gnl|loxAfr1|scaffold_8241 (18950-19147) | |
| 324-572, gnl|mm7|chr17 (38987922-38987725) | |
| 324-572, gnl|Mm7|chr17 (38987671-38987919) | |
| 324-572, gnl|monDom2|scaffold_0 (189588197-189588000) | |
| 324-572, gnl|oryCun1|scaffold_195602 (56116-56313) | |
| 324-572, gnl|panTro1|chr5_random (29731995-29731798) | |
| 324-572, gnl|rheMac2|chr4 (49193843-49194040) | |
| 324-572, gnl|rn3|chr9 (16079038-16079235) | |
| 324-572, gnl|tetNig1|chr14 (7756237-7756040) | |
| 324-572, gnl|xenTro1|scaffold_996 (261407-261210) | |
| 684-802, gnl|bosTau2|chr23 (19955425-19955543) | |
| 684-802, gnl|canFam2|chr12 (20327773-20327931) | |
| 684-802, gnl|danRer3|chrNA (160125579-160125451) | |
| 684-802, gnl|dasNov1|scaffold_10018 (80755-80930) | |
| 684-802, gnl|echTel1|scaffold_316686 (26947-27121) | |
| 684-802, gnl|fr1|chrUn (88087862-88088018) | |
| 684-802, gnl|galGal2|chr3 (106693649-106693496) | |
| 684-802, gnl|hg17|chr6 (49523332-49523498) | |
| 684-802, gnl|Hg17|chr6 (49523458-49523340) | |
| 684-802, gnl|loxAfr1|scaffold_8241 (14993-15168) | |
| 684-802, gnl|mm7|chr17 (38993553-38993379) | |
| 684-802, gnl|Mm7|chr17 (38993427-38993545) | |
| 684-802, gnl|monDom2|scaffold_0 (189598035-189597861) | |
| 684-802, gnl|oryCun1|scaffold_195602 (50767-50944) | |
| 684-802, gnl|panTro1|chr5_random (29609359-29609525) | |
| 684-802, gnl|rheMac2|chr4 (49190213-49190379) | |
| 684-802, gnl|rn3|chr9 (16075017-16075187) | |
| 684-802, gnl|tetNig1|chr14 (7757223-7757075) | |
| 684-802, gnl|xenTro1|scaffold_996 (266013-265868) | |
| 1047-1196, gnl|bosTau2|chr23 (19961158-19961307) | |
| 1047-1196, gnl|canFam2|chr12 (20320477-20320622) | |
| 1047-1196, gnl|danRer3|chrNA (160153259-160153114) | |
| 1047-1196, gnl|dasNov1|scaffold_49903 (4335-4480) | |
| 1047-1196, gnl|echTel1|scaffold_316686 (7804-7949) | |
| 1047-1196, gnl|fr1|chrUn (88085809-88085950) | |
| 1047-1196, gnl|galGal2|chr3 (106700664-106700524) | |
| 1047-1196, gnl|hg17|chr6 (49515871-49516016) | |
| 1047-1196, gnl|Hg17|chr6 (49516027-49515878) | |
| 1047-1196, gnl|loxAfr1|scaffold_8241 (11682-11828) | |
| 1047-1196, gnl|mm7|chr17 (38999130-38998990) | |
| 1047-1196, gnl|Mm7|chr17 (38998977-38999126) | |
| 1047-1196, gnl|monDom2|scaffold_0 (189606555-189606415) | |
| 1047-1196, gnl|oryCun1|scaffold_195602 (46160-46304) | |
| 1047-1196, gnl|panTro1|chr5_random (29601883-29602028) | |
| 1047-1196, gnl|rheMac2|chr4 (49181069-49181214) | |
| 1047-1196, gnl|rn3|chr9 (16069784-16069924) | |
| 1047-1196, gnl|tetNig1|chr14 (7758101-7757962) | |
| 1047-1196, gnl|xenTro1|scaffold_996 (283117-282977) | |
| 1361-1810, gnl|bosTau2|chr23 (19969305-19969751) | |
| 1361-1810, gnl|Hg17|chr6 (49507532-49507064) | |
| 1361-1810, gnl|Mm7|chr17 (39001213-39001665) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| lun (0.752445) | |
| sug (0.381874) | |
| sto (0.359648) | |
| tbr (0.308356) | |
| cli (0.305623) | |
| fcc (0.197785) | |
| ldo (0.194005) | |
| mgm (0.180343) | |
| cki (0.165235) | |
| cag (0.151194) | |
| liv (0.146284) | |
| cst (0.140036) | |
| ste (0.135208) | |
| kid (0.129735) | |
| med (0.116252) | |
| jej (0.0989218) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lun (0.752445) | |
| sug (0.381874) | |
| sto (0.359648) | |
| tbr (0.308356) | |
| cli (0.305623) | |
| fcc (0.197785) | |
| ldo (0.194005) | |
| mgm (0.180343) | |
| cki (0.165235) | |
| cag (0.151194) | |
| liv (0.146284) | |
| cst (0.140036) | |
| ste (0.135208) | |
| kid (0.129735) | |
| med (0.116252) | |
| jej (0.0989218) |