Non-Coding RNA Search

Ss1.1-Pig4-TMW8056D03.5

Sequence:


               
               ACAACAACAACAACAAAAAAAAAAAAAAAAAAAAAGAAGAATGTGTATTCTTCAGCTGCT
GGATATAGGATTCTATATATTCCACTAAATGGACCTTGATCATGGTGGTGTTCAGATCTG
TAACCTTACTCATTTGTGTCTGCCTGATCTATTACTCAGAGAGGTGTGCCAAAACCTACC
ATTATAACAGTGAATTTTTAAACCTCTAATCTTGTCAGTTTTGCTTTTTTATTTTTTGAC
TACGTTATCAGATACAAGTTTAAAGTCATTTAACAGTGCTATTCAATAGCACTTTCTCCA
GTGATAGCAAAGTTCTTTACTGTTGACAGCCGTCATGTCTGCTGAGTGCTTGAAATGTAA
CTAGGGTAACTGAGGAGCTCAGTATTTAATTTTATGTATTTTAACCAGTTTAAAGTTAAA
TAGCTAAATACGGCTGGTGGCTGCCATAATGGCCTATGCAAGTTTAAAATCTTTGTGGTC
AGTTAAGCCTTACTATTATGAAATACCGTCTTTCTTTCTAGTAAAGTTTTTTTTCTCCTA
AAGTCTATTTTTATCTGGTATTAATAGTATATGGGCTTTCTTTACCTTTTTGGGGGGGAG
GGTGTGCCCAAGGCATACAGAAGTTCCCAGGCCAGGGATTGAACCTGAGCCATAGCAGTG
ACCTGAGCCACCAAGTCCTTAGCTGCTAGGCCACCAGGGAACTCCCTTACCTTTTTTTTT
TTTTTATTGATCATTCTGTTAGGTCTCTTATTGTGGTAAAACATGAATAGCATAAAATTT
GCCATGTCAACCATTTTAAATGTAAAATTCAGTTATCCTTTTAGTTAAAAATGTTTTTAT
TTGGAAATAATTTCAAATTTACAGAAAAATTATAATAATACAGAGAATACTTATATACTC
TTTATCCAAGTTTACCTTTTATTAAATTTTGCTCCATTTGCTTTTATCATTTGCTTTTTG
TATACATATACATATGTATATGTGTGGATGTATGTGTGTTTGTATACTTTTTTTTCCTGA
ACCATTGCATATATGCTTGCCCTCGGGCTCTAAATACTTTAATATAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAACAACAACAACAAAAAAAAAAAAAAAAAAAAAGAAGAATGTGTATTCTTCAGCTGCT
GGATATAGGATTCTATATATTCCACTAAATGGACCTTGATCATGGTGGTGTTCAGATCTG
TAACCTTACTCATTTGTGTCTGCCTGATCTATTACTCAGAGAGGTGTGCCAAAACCTACC
ATTATAACAGTGAATTTTTAAACCTCTAATCTTGTCAGTTTTGCTTTTTTATTTTTTGAC
TACGTTATCAGATACAAGTTTAAAGTCATTTAACAGTGCTATTCAATAGCACTTTCTCCA
GTGATAGCAAAGTTCTTTACTGTTGACAGCCGTCATGTCTGCTGAGTGCTTGAAATGTAA
CTAGGGTAACTGAGGAGCTCAGTATTTAATTTTATGTATTTTAACCAGTTTAAAGTTAAA
TAGCTAAATACGGCTGGTGGCTGCCATAATGGCCTATGCAAGTTTAAAATCTTTGTGGTC
AGTTAAGCCTTACTATTATGAAATACCGTCTTTCTTTCTAGTAAAGTTTTTTTTCTCCTA
AAGTCTATTTTTATCTGGTATTAATAGTATATGGGCTTTCTTTACCTTTTTGGGGGGGAG
GGTGTGCCCAAGGCATACAGAAGTTCCCAGGCCAGGGATTGAACCTGAGCCATAGCAGTG
ACCTGAGCCACCAAGTCCTTAGCTGCTAGGCCACCAGGGAACTCCCTTACCTTTTTTTTT
TTTTTATTGATCATTCTGTTAGGTCTCTTATTGTGGTAAAACATGAATAGCATAAAATTT
GCCATGTCAACCATTTTAAATGTAAAATTCAGTTATCCTTTTAGTTAAAAATGTTTTTAT
TTGGAAATAATTTCAAATTTACAGAAAAATTATAATAATACAGAGAATACTTATATACTC
TTTATCCAAGTTTACCTTTTATTAAATTTTGCTCCATTTGCTTTTATCATTTGCTTTTTG
TATACATATACATATGTATATGTGTGGATGTATGTGTGTTTGTATACTTTTTTTTCCTGA
ACCATTGCATATATGCTTGCCCTCGGGCTCTAAATACTTTAATATAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               34-318, gnl|bosTau2|chr23 (13216035-13216325)
               

               
               34-318, gnl|Hg17|chr6 (43283539-43283793)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               34-318, gnl|bosTau2|chr23 (13216035-13216325)
               

               
               34-318, gnl|Hg17|chr6 (43283539-43283793)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               jca (0.11396)

	34-318, gnl\|bosTau2\|chr23 (13216035-13216325)
	34-318, gnl\|Hg17\|chr6 (43283539-43283793)