Non-Coding RNA Search

Ss1.1-Pig4-TMW8056D07.3

Sequence:


               
               GTGCAAACACTGGATTTTCATCTAGGCCATAACACCATGGTTACAAAACCATGTGGTGCT
CTAGAAAGTCCTATGGCAACAATAACCAAGATAACAAGGCGTCGCCATGAAAATCCACCC
CATGGAGTAGCAAGTGTGAAAGAATGGTTCAATTATGTTACAGCCACAAGGAATGAAGAG
CTAAACCTGCTTCGGAATGTTGATGCTAATAACACTGAGAATAGCACTACAGTGAAGAAT
TCTAGTTTGCTGAGTGGCTTCAGAGGAGGTTCTAGCTACAATCATGAAACAGAGACTATC
TTTGCACTACCAAGGATGCAGCTTGACTTTAAATCCATTCATGTTCAGGAACCACAAGAA
CCTTCATTACAGGATGCCAGCCTGAAGCCAAAGGTAGAATGCAGTGTGGTGACAGAGTTC
ACTGACCACATCTGTGTGACAATGGATGCTGAGCTCATCATGTTTCTTCATGATTTAGTG
TCAGCTTATCTTAAAGAAAAAGAAAAAGCCATTTTTCCACCTCGGATTTTATCTACTCGA
CCAGGACAAAAGAGTCCAGTTATAATTCATGATGAAAATTCCTCTGACAAAGACAGGGAA
GACAGTATCACTTACACGACTGTGGACTGGAGAGATTTTATGTGCAACACATGGCATCTA
GAACCCACACTTAGATTAATTTCTTGGACTGGAAGAAAGATTGATCCAGTAGGTGTTGAT
TATATTCTTCAAAAATTGGGCTTTCATCATGCCAGGACTACTATTCCTAAATGGCTTCAA
AGAGGAGTCATGGACCCACTGGACAAGGTTCTGTCAGTTCTTATCAAAAAACTTGGTACT
GCACTACAGGATGAAAAGGAAAAGAAAGGAAAAGACAAAGAAGAACACTAAAAAAAGTAA
CTTCATCTGTGAACAAATTTTGATTCTGTCCGTTAAGCTTTATTACACTGGAGTGTTGGG
GTTTTTGTATAGTAAAATTATTTTAAATATAACTTTAAAAAATTCTAATTTTGTGGCCAT
TATAAGTTTATAAGTTAACCTGTTTATTCTAGTTCCACCATTCTGTATACAGTGAAGTAT
TGCATGATGATGTAAATTTTGTGAAAAACTAGATTAAAATATACAGATCTGTTCAGTAGA
GTTTATAATTGTATTATGTGCAATATGATTCCTGCATCTTTAAAATATTTTCAGAATAAC
TGTGAATTTTCTTTGTTACTGGCCATAACTTTTAGAAAAAAATCTTGTTGATAATGTGAT
TTTCTTTGGTCATTAAATGCTTTTTTAAAACATAGACTTGTATAAATACCTATTTGTATA
TAGTCTGAGTAACTGTGATACGAATAAATACCACTAAAGTATTACCTGTAACTATTGTAA
TAAAGAATAATTGGTTTCATTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGCAAACACTGGATTTTCATCTAGGCCATAACACCATGGTTACAAAACCATGTGGTGCT
CTAGAAAGTCCTATGGCAACAATAACCAAGATAACAAGGCGTCGCCATGAAAATCCACCC
CATGGAGTAGCAAGTGTGAAAGAATGGTTCAATTATGTTACAGCCACAAGGAATGAAGAG
CTAAACCTGCTTCGGAATGTTGATGCTAATAACACTGAGAATAGCACTACAGTGAAGAAT
TCTAGTTTGCTGAGTGGCTTCAGAGGAGGTTCTAGCTACAATCATGAAACAGAGACTATC
TTTGCACTACCAAGGATGCAGCTTGACTTTAAATCCATTCATGTTCAGGAACCACAAGAA
CCTTCATTACAGGATGCCAGCCTGAAGCCAAAGGTAGAATGCAGTGTGGTGACAGAGTTC
ACTGACCACATCTGTGTGACAATGGATGCTGAGCTCATCATGTTTCTTCATGATTTAGTG
TCAGCTTATCTTAAAGAAAAAGAAAAAGCCATTTTTCCACCTCGGATTTTATCTACTCGA
CCAGGACAAAAGAGTCCAGTTATAATTCATGATGAAAATTCCTCTGACAAAGACAGGGAA
GACAGTATCACTTACACGACTGTGGACTGGAGAGATTTTATGTGCAACACATGGCATCTA
GAACCCACACTTAGATTAATTTCTTGGACTGGAAGAAAGATTGATCCAGTAGGTGTTGAT
TATATTCTTCAAAAATTGGGCTTTCATCATGCCAGGACTACTATTCCTAAATGGCTTCAA
AGAGGAGTCATGGACCCACTGGACAAGGTTCTGTCAGTTCTTATCAAAAAACTTGGTACT
GCACTACAGGATGAAAAGGAAAAGAAAGGAAAAGACAAAGAAGAACACTAAAAAAAGTAA
CTTCATCTGTGAACAAATTTTGATTCTGTCCGTTAAGCTTTATTACACTGGAGTGTTGGG
GTTTTTGTATAGTAAAATTATTTTAAATATAACTTTAAAAAATTCTAATTTTGTGGCCAT
TATAAGTTTATAAGTTAACCTGTTTATTCTAGTTCCACCATTCTGTATACAGTGAAGTAT
TGCATGATGATGTAAATTTTGTGAAAAACTAGATTAAAATATACAGATCTGTTCAGTAGA
GTTTATAATTGTATTATGTGCAATATGATTCCTGCATCTTTAAAATATTTTCAGAATAAC
TGTGAATTTTCTTTGTTACTGGCCATAACTTTTAGAAAAAAATCTTGTTGATAATGTGAT
TTTCTTTGGTCATTAAATGCTTTTTTAAAACATAGACTTGTATAAATACCTATTTGTATA
TAGTCTGAGTAACTGTGATACGAATAAATACCACTAAAGTATTACCTGTAACTATTGTAA
TAAAGAATAATTGGTTTCATTCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8WVD8_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8WVD8_HUMAN

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               174-373, gnl|bosTau2|chr17 (20525899-20525700)
               

               
               174-373, gnl|Hg17|chr4 (123634551-123634750)
               

               
               174-373, gnl|Mm7|chr3 (36858742-36858941)
               


               
               671-1403, gnl|bosTau2|chr17 (20518813-20518058)
               

               
               671-1403, gnl|Hg17|chr4 (123640787-123641516)
               

               
               671-1403, gnl|Mm7|chr3 (36863101-36863801)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               174-373, gnl|bosTau2|chr17 (20525899-20525700)
               

               
               174-373, gnl|Hg17|chr4 (123634551-123634750)
               

               
               174-373, gnl|Mm7|chr3 (36858742-36858941)
               


               
               671-1403, gnl|bosTau2|chr17 (20518813-20518058)
               

               
               671-1403, gnl|Hg17|chr4 (123640787-123641516)
               

               
               671-1403, gnl|Mm7|chr3 (36863101-36863801)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               ski (0.29347)
               

               
               tes (0.207814)
               

               
               fco (0.157208)
               

               
               cag (0.151194)
               

               
               lyg (0.133103)
               

               
               cbr (0.127975)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.29347)
               

               
               tes (0.207814)
               

               
               fco (0.157208)
               

               
               cag (0.151194)
               

               
               lyg (0.133103)
               

               
               cbr (0.127975)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	174-373, gnl\|bosTau2\|chr17 (20525899-20525700)
	174-373, gnl\|Hg17\|chr4 (123634551-123634750)
	174-373, gnl\|Mm7\|chr3 (36858742-36858941)

	671-1403, gnl\|bosTau2\|chr17 (20518813-20518058)
	671-1403, gnl\|Hg17\|chr4 (123640787-123641516)
	671-1403, gnl\|Mm7\|chr3 (36863101-36863801)

	ski (0.29347)
	tes (0.207814)
	fco (0.157208)
	cag (0.151194)
	lyg (0.133103)
	cbr (0.127975)
	sug (0.127291)
	thg (0.126791)
	tra (0.123092)
	ebs (0.118301)
	spc (0.113366)
	jej (0.0989218)