Non-Coding RNA Search

Ss1.1-Pig4-TMW8056D12.3

Sequence:


               
               GTGCTGCATAGGTGTTGAAAGAACAAATGGCTGTGAATGAATGTTTGCTGAATGACTTTG
TCTAATGAATGATCAAGGAATGATTCAGTGTGGGCTGAGTGACTGAACAGGAGCCCCCAA
GCAAGTTCCTACAAAGATGGGGGCCCCACTGAGTCTTCTTCCATTCTCCTTCCTAGGAGC
CCTGGCTGTGGTTGGGGGGCAGTGGACCATGCCGGGGGCAGTGGAAAGCCCCACCTGGAA
GCAGGCGGAGGATATTAGAGACATTTACGACTTCCGTGATGTTCTAGGAACGTGAGTCTC
AGGGTGGGAGTGAAGGGGCGGCTGTCCCTGAGATGGGAGGTGGGGTTGGGAAGGCCCTTA
CCCCTGGGCCTGGAGGGCTGATGCCAGGGCGGTGCTTCCTCTGGCCAGTTGATCACTGCT
TCCTGTTTCTTGCAGCCCAGGCCCTATGGTAGCATTGCCTGGCCCAGACTGGCCTTGGCT
TTTCACTTCTGGCTGACGGTGGGTGGGAACTGAGGCGGCTCTTGCCAGAGTTCTAGGTTC
CTGTGATGAGAATGAAGGAGCCACTTTTTCAAACTTGCTGCTAAGAACTGGGGGTTCTAA
CCTAGGTTTTAGAACTGAGGCTGGGCATGGCTGCCCACAATGGTGGGAATCCAGAAATAA
CTCAAACCTGATCTTTGCCCCTCACATTGATCCCAAACATGTGAGGGAGACAGACCCACG
TAAGATGACAACAGGTGTGTGCTCTGCTCCAGCTAAAGTCATGAATGAGGACTTTGTTGA
GCCCAGAGAGAGCAGAGACTTCTGTGTGGGGATAAACTTTCTGGAGAAGGGGCCTGAGAG
CTGGGGACTGAAAGGATGGGTAGGAGTGTACTTGTCAGAGAAAGAGAAGGTATTCCAGGC
AGAAGGAATTAGCATAAGCAAAGGCTCAAAGGCATGTTGTGTATGGAAAGAGGTAGAGTC
TGGTAAAGCTTATAACAGAGGCTGGGGGAAGAGTAGAAGAGGCTGAGAGGAACAGATCAT
GGAAGGTGAATACCAAGCTATGGAGGCTGGACTTAATCCCACAAGTCATAGGAAGACATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGCTGCATAGGTGTTGAAAGAACAAATGGCTGTGAATGAATGTTTGCTGAATGACTTTG
TCTAATGAATGATCAAGGAATGATTCAGTGTGGGCTGAGTGACTGAACAGGAGCCCCCAA
GCAAGTTCCTACAAAGATGGGGGCCCCACTGAGTCTTCTTCCATTCTCCTTCCTAGGAGC
CCTGGCTGTGGTTGGGGGGCAGTGGACCATGCCGGGGGCAGTGGAAAGCCCCACCTGGAA
GCAGGCGGAGGATATTAGAGACATTTACGACTTCCGTGATGTTCTAGGAACGTGAGTCTC
AGGGTGGGAGTGAAGGGGCGGCTGTCCCTGAGATGGGAGGTGGGGTTGGGAAGGCCCTTA
CCCCTGGGCCTGGAGGGCTGATGCCAGGGCGGTGCTTCCTCTGGCCAGTTGATCACTGCT
TCCTGTTTCTTGCAGCCCAGGCCCTATGGTAGCATTGCCTGGCCCAGACTGGCCTTGGCT
TTTCACTTCTGGCTGACGGTGGGTGGGAACTGAGGCGGCTCTTGCCAGAGTTCTAGGTTC
CTGTGATGAGAATGAAGGAGCCACTTTTTCAAACTTGCTGCTAAGAACTGGGGGTTCTAA
CCTAGGTTTTAGAACTGAGGCTGGGCATGGCTGCCCACAATGGTGGGAATCCAGAAATAA
CTCAAACCTGATCTTTGCCCCTCACATTGATCCCAAACATGTGAGGGAGACAGACCCACG
TAAGATGACAACAGGTGTGTGCTCTGCTCCAGCTAAAGTCATGAATGAGGACTTTGTTGA
GCCCAGAGAGAGCAGAGACTTCTGTGTGGGGATAAACTTTCTGGAGAAGGGGCCTGAGAG
CTGGGGACTGAAAGGATGGGTAGGAGTGTACTTGTCAGAGAAAGAGAAGGTATTCCAGGC
AGAAGGAATTAGCATAAGCAAAGGCTCAAAGGCATGTTGTGTATGGAAAGAGGTAGAGTC
TGGTAAAGCTTATAACAGAGGCTGGGGGAAGAGTAGAAGAGGCTGAGAGGAACAGATCAT
GGAAGGTGAATACCAAGCTATGGAGGCTGGACTTAATCCCACAAGTCATAGGAAGACATA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               326-433, - strand, RNAz p=0.640933
               

               
               543-650, + strand, RNAz p=0.968178

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               326-433, - strand, RNAz p=0.640933
               

               
               543-650, + strand, RNAz p=0.968178

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               13-1079, gnl|bosTau2|chr22 (11914771-11913689)
               

               
               13-1079, gnl|Hg17|chr3 (9784619-9783575)
               

               
               13-1079, gnl|Mm7|chr6 (113503063-113502036)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-1079, gnl|bosTau2|chr22 (11914771-11913689)
               

               
               13-1079, gnl|Hg17|chr3 (9784619-9783575)
               

               
               13-1079, gnl|Mm7|chr6 (113503063-113502036)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	326-433, - strand, RNAz p=0.640933
	543-650, + strand, RNAz p=0.968178

	13-1079, gnl\|bosTau2\|chr22 (11914771-11913689)
	13-1079, gnl\|Hg17\|chr3 (9784619-9783575)
	13-1079, gnl\|Mm7\|chr6 (113503063-113502036)