Non-Coding RNA Search

Ss1.1-Pig4-TMW8056D14.3

Sequence:


               
               TCCCCCCCTACAAAGGGCAGCTTGGCCGAGCTTGGCGGCCCCGGACTTTGCCAGCAAGGG
CTCTGCCTGCAGAGATTATGTGTTTTTGGCTGTTAAAGATGTCTGAACCTTTTTTACTCA
GGTAATTTTAACTTAAACTGAAGCAAATGTCAGGAAACACTAGCCTTAAATCCAGTCGGG
ACAGGGAGTCTCATCCCGAGAAGGGGGGAAGGGGCGCGTGGGGAGGGTCGGCTTCGGCGC
TGGGAAGCCAGGCCAGCCTCCAGATGCAGCCCTGCCCGCTGCCCCTGGCCGCCTGCCGCC
AGCAGGGCTCCAGGGCTGCCGCCGGCTCAGCTGTGAGCTTGCGGGCCGGGACCTCGAACC
TGCGCCTTGTGCATCTGGAGGAGGTCCTGGGATCCCACCGACCCTCGGGATAGAAGCGAG
GGCCCGCCAGCTGGCACGGGAACCCCCTTGGGGTGGGAGACAGGCCCGGGGCCAAGCTGA
CCCCGTGCAGCCCCTGCGCCTGGTCGTCACCCGTCTGCGAAGTCCCTTGGTCACCTGTTT
ACAGCGTAGCATCTGTGCACCCCGTCTGGGGCCCAGGGCCACGTTTGATGGTGTTTGTGT
TGACTCCATGTCTGACTAAATCAGGTGAAACCCACGGCCGTGAGCTGGGCCGAGAAGCCT
CGAGCTGGGCCGTGTCCTTCCTGTCATCCACCCACGTGTACGTGTCCCTCAGAGCTGAAA
TAAAATCTAATTTTGGAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCCCCCTACAAAGGGCAGCTTGGCCGAGCTTGGCGGCCCCGGACTTTGCCAGCAAGGG
CTCTGCCTGCAGAGATTATGTGTTTTTGGCTGTTAAAGATGTCTGAACCTTTTTTACTCA
GGTAATTTTAACTTAAACTGAAGCAAATGTCAGGAAACACTAGCCTTAAATCCAGTCGGG
ACAGGGAGTCTCATCCCGAGAAGGGGGGAAGGGGCGCGTGGGGAGGGTCGGCTTCGGCGC
TGGGAAGCCAGGCCAGCCTCCAGATGCAGCCCTGCCCGCTGCCCCTGGCCGCCTGCCGCC
AGCAGGGCTCCAGGGCTGCCGCCGGCTCAGCTGTGAGCTTGCGGGCCGGGACCTCGAACC
TGCGCCTTGTGCATCTGGAGGAGGTCCTGGGATCCCACCGACCCTCGGGATAGAAGCGAG
GGCCCGCCAGCTGGCACGGGAACCCCCTTGGGGTGGGAGACAGGCCCGGGGCCAAGCTGA
CCCCGTGCAGCCCCTGCGCCTGGTCGTCACCCGTCTGCGAAGTCCCTTGGTCACCTGTTT
ACAGCGTAGCATCTGTGCACCCCGTCTGGGGCCCAGGGCCACGTTTGATGGTGTTTGTGT
TGACTCCATGTCTGACTAAATCAGGTGAAACCCACGGCCGTGAGCTGGGCCGAGAAGCCT
CGAGCTGGGCCGTGTCCTTCCTGTCATCCACCCACGTGTACGTGTCCCTCAGAGCTGAAA
TAAAATCTAATTTTGGAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               50-187, gnl|bosTau2|chr5 (76064328-76064191)
               

               
               50-187, gnl|Hg17|chr22 (48939914-48940057)
               

               
               50-187, gnl|Mm7|chr15 (89168782-89168955)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               50-187, gnl|bosTau2|chr5 (76064328-76064191)
               

               
               50-187, gnl|Hg17|chr22 (48939914-48940057)
               

               
               50-187, gnl|Mm7|chr15 (89168782-89168955)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fcc (0.197785)
               

               
               col (0.195008)
               

               
               fhi (0.169578)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               nbm (0.0993246)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               fhi (0.169578)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               nbm (0.0993246)

	50-187, gnl\|bosTau2\|chr5 (76064328-76064191)
	50-187, gnl\|Hg17\|chr22 (48939914-48940057)
	50-187, gnl\|Mm7\|chr15 (89168782-89168955)

	fcc (0.197785)
	col (0.195008)
	fhi (0.169578)
	nca (0.136874)
	pla (0.133672)
	nbm (0.0993246)