Non-Coding RNA Search

Ss1.1-Pig4-TMW8056D15.5

Sequence:


               
               CTCTTGTACAGCATCTTCCTCTTCCTTTTCCTCAAGTGGCTCTTCCATGTCATCCTCTCA
GAACCAGCATGGGAGTTCCAAAGGGAAATCTGCCAGCAGAAATAAGAAGCCCTCCTTAAC
AGCTGTTATAGATAAACTGAAGCATGGGGTTGTCACCAGTGGCCCTGGGAGTGAAGACTC
AATGGACGGCCAGGTGGGGGTGAGCACAAATTCTTCTAGCCATCCTATGTCCTCCAAACA
TAGCATGTCAGGAGGAGAGTTCCAGGGCAAGCGTGAGAAAAGTGATAAAGACAAATCAAA
GGTTTCCACCTCGGGGGGCTCAGTGGATTCATCTAAGAAGACATCAGAGTCAAAAAATGT
GGGGAGCACAGGTGTGGCAAAAATTATCATCAGCAAGCATGATGGGGGATCCCCCAGCAT
TAAAGCCAAAGTGACTTTGCAGAAACCTGGGGAAAGTAGTGGAGAAGGGCTTAGGCCTCA
GATGGCCTCTTCCAAAAACTATGGCTCTCCACTCATCAGTGGTTCCACTCCAAAGCATGA
GCGTGGCTCTCCCAGCCATAGCAAGTCACCAGCATATACCCCTCAGAATCTGGACAGTGA
AAGTGAATCAGGCTCCTCCATAGCAGAGAAGTCTTATCAGAACAGTCCCAGCTCAGATGA
TGGCATCCGACCTCTTCCAGAATACAGCACAGAGAAGCATAAGAAGCACAAAAAAGAAAA
GAAGAAAGTAAAGGACAAAGATAGGGATCGGGACCGGGACCGAGACCGAGACAAGAAAAA
GTCTCATAGCATCAAGCCAGAGAGTTGGTCTAAATCACCCATCTCTTCAGACCAGTCCTT
GTCTATGACAAGTAACACAATCTTATCTACAGACAGGCCCTCAAGACTCAGCCCTGACTT
TATGATTGGGGAGGAAGATGATGATCTTATGGATGTGGCCCTGATTGGCAACTAGGAACC
TTACTTTTAAAAACAAAAACATGGCCAGAGAAAAACTAATAGGTGTATAGGCAAATCACC
ATAAGGGGTGAGTCAGAGAGGTCTGATTTTGTGTTAAAGAATCTTAAATGGCATGGCTTC
GACACCGAGTGGGGTGAATTTAGAAAGGCATAGCCAGACCCTACTAAAGAGACCATAGGG
TTTGATTCTGGTTACTAAGAATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTTGTACAGCATCTTCCTCTTCCTTTTCCTCAAGTGGCTCTTCCATGTCATCCTCTCA
GAACCAGCATGGGAGTTCCAAAGGGAAATCTGCCAGCAGAAATAAGAAGCCCTCCTTAAC
AGCTGTTATAGATAAACTGAAGCATGGGGTTGTCACCAGTGGCCCTGGGAGTGAAGACTC
AATGGACGGCCAGGTGGGGGTGAGCACAAATTCTTCTAGCCATCCTATGTCCTCCAAACA
TAGCATGTCAGGAGGAGAGTTCCAGGGCAAGCGTGAGAAAAGTGATAAAGACAAATCAAA
GGTTTCCACCTCGGGGGGCTCAGTGGATTCATCTAAGAAGACATCAGAGTCAAAAAATGT
GGGGAGCACAGGTGTGGCAAAAATTATCATCAGCAAGCATGATGGGGGATCCCCCAGCAT
TAAAGCCAAAGTGACTTTGCAGAAACCTGGGGAAAGTAGTGGAGAAGGGCTTAGGCCTCA
GATGGCCTCTTCCAAAAACTATGGCTCTCCACTCATCAGTGGTTCCACTCCAAAGCATGA
GCGTGGCTCTCCCAGCCATAGCAAGTCACCAGCATATACCCCTCAGAATCTGGACAGTGA
AAGTGAATCAGGCTCCTCCATAGCAGAGAAGTCTTATCAGAACAGTCCCAGCTCAGATGA
TGGCATCCGACCTCTTCCAGAATACAGCACAGAGAAGCATAAGAAGCACAAAAAAGAAAA
GAAGAAAGTAAAGGACAAAGATAGGGATCGGGACCGGGACCGAGACCGAGACAAGAAAAA
GTCTCATAGCATCAAGCCAGAGAGTTGGTCTAAATCACCCATCTCTTCAGACCAGTCCTT
GTCTATGACAAGTAACACAATCTTATCTACAGACAGGCCCTCAAGACTCAGCCCTGACTT
TATGATTGGGGAGGAAGATGATGATCTTATGGATGTGGCCCTGATTGGCAACTAGGAACC
TTACTTTTAAAAACAAAAACATGGCCAGAGAAAAACTAATAGGTGTATAGGCAAATCACC
ATAAGGGGTGAGTCAGAGAGGTCTGATTTTGTGTTAAAGAATCTTAAATGGCATGGCTTC
GACACCGAGTGGGGTGAATTTAGAAAGGCATAGCCAGACCCTACTAAAGAGACCATAGGG
TTTGATTCTGGTTACTAAGAATCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61872208|ref|XP_603367.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61872208|ref|XP_603367.1|

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               1-120, - strand, RNAz p=0.947538
               

               
               161-280, - strand, RNAz p=0.997058
               

               
               401-560, - strand, RNAz p=0.867149
               

               
               721-880, - strand, RNAz p=0.965836

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-120, - strand, RNAz p=0.947538
               

               
               161-280, - strand, RNAz p=0.997058
               

               
               401-560, - strand, RNAz p=0.867149
               

               
               721-880, - strand, RNAz p=0.965836

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1164, gnl|bosTau2|chr19 (32928593-32927446)
               

               
               1-1164, gnl|Hg17|chr17 (34818208-34817041)
               

               
               1-1164, gnl|Mm7|chr11 (98265210-98264082)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1164, gnl|bosTau2|chr19 (32928593-32927446)
               

               
               1-1164, gnl|Hg17|chr17 (34818208-34817041)
               

               
               1-1164, gnl|Mm7|chr11 (98265210-98264082)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cst (0.140036)
               

               
               bla (0.124347)
               

               
               jej (0.0989218)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)
               

               
               bla (0.124347)
               

               
               jej (0.0989218)

	1-120, - strand, RNAz p=0.947538
	161-280, - strand, RNAz p=0.997058
	401-560, - strand, RNAz p=0.867149
	721-880, - strand, RNAz p=0.965836

	1-1164, gnl\|bosTau2\|chr19 (32928593-32927446)
	1-1164, gnl\|Hg17\|chr17 (34818208-34817041)
	1-1164, gnl\|Mm7\|chr11 (98265210-98264082)