Ss1.1-Pig4-TMW8056D21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGCGGCGCCGCCTCCCGCTGCACCTCCGCCTCTCGCTCGGCCCCGCCGCCGGCTTCCTC CTCCCCAGACCGCCCTCAGCCCGCGCGCCAGCCGGCTCCGTTATGGCGACCCGCAGCCCC AGCGTCGTGATTAGTGATGACGAACCAGGTTATGACCTAGATTTATTTTGTATACCTAAT CATTATGCCGAGGATTTGGAAAAGGTTTTTATTCCTCATGGACTAATTATGGACAGGACT GAACGGCTTGCTCGAGATGTGATGAAAGAGATGGGAGGCCATCACATCGTAGCCCTCTGT GTGCTCAAGGGGGGCTATAAATTCTTTGCTGACCTGCTGGATTACATCAAAGCACTGAAC AGAAATAGTGATAGATCCATTCCTATGACTGTAGATTTTATCAGACTGAAGAGCTACTGT AATGACCAGTCAACGGGCGATATAAAAGTAATTGGTGGAGATGATCTCTCAACTTTAACT GGAAAGAATGTCTTGATTGTTGAAGATATAATTGACACTGGCAAAACAATGCAAACCTTG CTTTCCTTGGTCAAGCAGCATAATCCAAAGATGGTCAAGGTTGCAAGCTTGCTGGTGAAA AGGACCCCTCGAAGTGTTGGCTATAGACCAGACTTTGTTGGATTTGAAATTCCAGACAAG TTTGTGGTAGGCTATGCCCTTGACTACAATGAATACTTCAGGGACTTGAATCATGTTTGT GTCATTAGTGAAACTGGAAAAGCAAAATACAAAGCCTAAGAGGAGAGTTCAAGTTGAGTT TGGAAACATCTGGAGTCCCATTGAAATCACCAGTAAAGTTATCACATGTTCTAGTTCTGT GGCCAGCTGCTTAGTAGAGCTAATTGCATGTTATCTTCTAAGAATTTTACGTTTTGTATT TTAGAAATGTCAGTTGCTGCATTCCTGAACTCTTTATTTGCACTATGAGCCTATAGACTA TCGGTTCCCTTTGGGTGGATTGTTGTTTGACTCGTGAATGAAAAATCTCTTAAACCACAC CACTATTGAATGAAAATATTGAAATCGTATCTGTAAGAAACATTTAAAGAGAAGAATATA TTAGTTTTTTAATTGGTACTTTAATTTTTATATATTCAGGAAAGAACAGAAGTGATTGAA TATTGTTAATTATTACCACTGTGTGTTTAGAAAAGTAAGCAGTCAGTTTCATATCAGTGA CAGCACTTAGAGGTATTGTTATGTCAAATAAAAAATATGTCCTGGGATTATTTTAGTAGG TTTCAACACTATTGACTGTATTTTCTCTCTTGTTCAGATTATTTCCGGTGAGTTGTTGTC AATAAGTACAGACCCATAAATTCCAGAAACCTACCAATTTTTGAATTCGTCAGTGTAAAA ATCCTTAAAATAAAGGCTGTCTCTTTTAAAAGAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGCGGCGCCGCCTCCCGCTGCACCTCCGCCTCTCGCTCGGCCCCGCCGCCGGCTTCCTC CTCCCCAGACCGCCCTCAGCCCGCGCGCCAGCCGGCTCCGTTATGGCGACCCGCAGCCCC AGCGTCGTGATTAGTGATGACGAACCAGGTTATGACCTAGATTTATTTTGTATACCTAAT CATTATGCCGAGGATTTGGAAAAGGTTTTTATTCCTCATGGACTAATTATGGACAGGACT GAACGGCTTGCTCGAGATGTGATGAAAGAGATGGGAGGCCATCACATCGTAGCCCTCTGT GTGCTCAAGGGGGGCTATAAATTCTTTGCTGACCTGCTGGATTACATCAAAGCACTGAAC AGAAATAGTGATAGATCCATTCCTATGACTGTAGATTTTATCAGACTGAAGAGCTACTGT AATGACCAGTCAACGGGCGATATAAAAGTAATTGGTGGAGATGATCTCTCAACTTTAACT GGAAAGAATGTCTTGATTGTTGAAGATATAATTGACACTGGCAAAACAATGCAAACCTTG CTTTCCTTGGTCAAGCAGCATAATCCAAAGATGGTCAAGGTTGCAAGCTTGCTGGTGAAA AGGACCCCTCGAAGTGTTGGCTATAGACCAGACTTTGTTGGATTTGAAATTCCAGACAAG TTTGTGGTAGGCTATGCCCTTGACTACAATGAATACTTCAGGGACTTGAATCATGTTTGT GTCATTAGTGAAACTGGAAAAGCAAAATACAAAGCCTAAGAGGAGAGTTCAAGTTGAGTT TGGAAACATCTGGAGTCCCATTGAAATCACCAGTAAAGTTATCACATGTTCTAGTTCTGT GGCCAGCTGCTTAGTAGAGCTAATTGCATGTTATCTTCTAAGAATTTTACGTTTTGTATT TTAGAAATGTCAGTTGCTGCATTCCTGAACTCTTTATTTGCACTATGAGCCTATAGACTA TCGGTTCCCTTTGGGTGGATTGTTGTTTGACTCGTGAATGAAAAATCTCTTAAACCACAC CACTATTGAATGAAAATATTGAAATCGTATCTGTAAGAAACATTTAAAGAGAAGAATATA TTAGTTTTTTAATTGGTACTTTAATTTTTATATATTCAGGAAAGAACAGAAGTGATTGAA TATTGTTAATTATTACCACTGTGTGTTTAGAAAAGTAAGCAGTCAGTTTCATATCAGTGA CAGCACTTAGAGGTATTGTTATGTCAAATAAAAAATATGTCCTGGGATTATTTTAGTAGG TTTCAACACTATTGACTGTATTTTCTCTCTTGTTCAGATTATTTCCGGTGAGTTGTTGTC AATAAGTACAGACCCATAAATTCCAGAAACCTACCAATTTTTGAATTCGTCAGTGTAAAA ATCCTTAAAATAAAGGCTGTCTCTTTTAAAAGAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 482-601, + strand, RNAz p=0.741947 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 482-601, + strand, RNAz p=0.741947 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 58-1428, gnl|bosTau2|chr18 (39497563-39498927) | |
| 58-1428, gnl|Hg17|chr5 (30284180-30285343) | |
| 58-1428, gnl|Mm7|chr17 (63608753-63607612) | |
| 234-417, gnl|bosTau2|chr13 (14116346-14116163) | |
| 234-417, gnl|canFam2|chr2 (11456058-11455863) | |
| 234-417, gnl|danRer3|chrUn (102088148-102087955) | |
| 234-417, gnl|dasNov1|scaffold_7976 (2410-2214) | |
| 234-417, gnl|echTel1|scaffold_255791 (708-512) | |
| 234-417, gnl|fr1|chrUn (108423766-108423573) | |
| 234-417, gnl|galGal2|chr2 (16084241-16084045) | |
| 234-417, gnl|hg17|chr10 (25266116-25266312) | |
| 234-417, gnl|Hg17|chr10 (25266305-25266122) | |
| 234-417, gnl|loxAfr1|scaffold_34840 (10220-10020) | |
| 234-417, gnl|mm7|chr2 (21184969-21185165) | |
| 234-417, gnl|Mm7|chr2 (21185158-21184975) | |
| 234-417, gnl|monDom2|scaffold_7 (43633040-43632844) | |
| 234-417, gnl|oryCun1|scaffold_199169 (11454-11257) | |
| 234-417, gnl|panTro1|chr8 (25538047-25538243) | |
| 234-417, gnl|rheMac2|chr9 (25122434-25122630) | |
| 234-417, gnl|rn3|chr17 (95135372-95135568) | |
| 234-417, gnl|tetNig1|chrUn_random (35256649-35256842) | |
| 234-417, gnl|xenTro1|scaffold_42 (1598496-1598300) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 58-1428, gnl|bosTau2|chr18 (39497563-39498927) | |
| 58-1428, gnl|Hg17|chr5 (30284180-30285343) | |
| 58-1428, gnl|Mm7|chr17 (63608753-63607612) | |
| 234-417, gnl|bosTau2|chr13 (14116346-14116163) | |
| 234-417, gnl|canFam2|chr2 (11456058-11455863) | |
| 234-417, gnl|danRer3|chrUn (102088148-102087955) | |
| 234-417, gnl|dasNov1|scaffold_7976 (2410-2214) | |
| 234-417, gnl|echTel1|scaffold_255791 (708-512) | |
| 234-417, gnl|fr1|chrUn (108423766-108423573) | |
| 234-417, gnl|galGal2|chr2 (16084241-16084045) | |
| 234-417, gnl|hg17|chr10 (25266116-25266312) | |
| 234-417, gnl|Hg17|chr10 (25266305-25266122) | |
| 234-417, gnl|loxAfr1|scaffold_34840 (10220-10020) | |
| 234-417, gnl|mm7|chr2 (21184969-21185165) | |
| 234-417, gnl|Mm7|chr2 (21185158-21184975) | |
| 234-417, gnl|monDom2|scaffold_7 (43633040-43632844) | |
| 234-417, gnl|oryCun1|scaffold_199169 (11454-11257) | |
| 234-417, gnl|panTro1|chr8 (25538047-25538243) | |
| 234-417, gnl|rheMac2|chr9 (25122434-25122630) | |
| 234-417, gnl|rn3|chr17 (95135372-95135568) | |
| 234-417, gnl|tetNig1|chrUn_random (35256649-35256842) | |
| 234-417, gnl|xenTro1|scaffold_42 (1598496-1598300) |
| Expressed library(ies): 29 entry(ies) | More info |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
| lun (0.902935) | |
| spl (0.859107) | |
| mgp (0.692042) | |
| ret (0.643666) | |
| kid (0.518941) | |
| tra (0.492368) | |
| pan (0.471921) | |
| bfe (0.449573) | |
| fco (0.314416) | |
| lin (0.291206) | |
| fce (0.271592) | |
| ova (0.258264) | |
| cbe (0.239234) | |
| ecc (0.23007) | |
| tes (0.207814) | |
| gul (0.177588) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| pty (0.142714) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| sug (0.127291) | |
| thg (0.126791) | |
| ese (0.126502) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| spc (0.113366) |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lun (0.902935) | |
| spl (0.859107) | |
| mgp (0.692042) | |
| ret (0.643666) | |
| kid (0.518941) | |
| tra (0.492368) | |
| pan (0.471921) | |
| bfe (0.449573) | |
| fco (0.314416) | |
| lin (0.291206) | |
| fce (0.271592) | |
| ova (0.258264) | |
| cbe (0.239234) | |
| ecc (0.23007) | |
| tes (0.207814) | |
| gul (0.177588) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| pty (0.142714) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| sug (0.127291) | |
| thg (0.126791) | |
| ese (0.126502) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| spc (0.113366) |