Ss1.1-Pig4-TMW8056D24.5
|
TTTTTTTTTTTTTTGACCATATTAAGTAACCATTTTGGTACTACTATCCAATAGGTACCA
CTGTAGGTTTTATACAGTGTGGAGCTGACTCAGTTGGCATTTTAGAATCTGTTAAAATTA
TATAGTTTTTCCATGAATACTTTGGAAAAAAAATTTCTGACTTAACCTTTTTACCACAAA
TATGCAAATGTAATTTTCTTGACTTCACAAATATTCTCTTCCCTTTTCAGGGGAAAAATC
TGAGGATGGGAGACTTAGGATAACCAGTGAAGTGATAGTTACCCAGATCTGGACCATTTC
ATGTTTGTTAAATTGGAATCTTCACTAGGTTCAAACTCAAATTTAAACTTCTTCACCTAC
TATTTAAATATTTTTAACATTAAATTCAAGTAATTTGTTGAAAGCCTGTAAAAAAGAGGG
TTGCAGTCATCTCTTATGCTATGCATGGGGTCTGATCTCAAATACACTAAATATGGGGTG
TAGAAACTAAAATGAAGCCTGCTATGTGAAACTACTTTCACTTATGGTCAATGGTTTTTG
TACCAATATTTTTTTATACACTTCAGTGCAAGTCCTGTCAGTTAACCTTACTTTATGAGT
AAGCTAAATAACCCAAATTACATTTAAGCCTGTTTTACTACTACGGCACTTTGAAAAATG
CTCAGAAACCAACTTCTTAATTGGCAAAAGGTTCCATGTACCATGTGCTGAAGCATCTAC
TTTAAATGTGGATATCTGTGAATGATAATGTTTTCCTTCATGTAAGTGCCTGTTCAGAGT
TTCAGAATTTAAAAATGCCAAATATTTTCATGGTCACTTGCATGTAGAAATCTGGAAAAT
ATTCAGAGAAAATCTGAAAACCAGTTGTATTTAACCGGCCTCAAATTGTGCAACCATGAT
GTAAAATAAAGAATTTGAAACAGGTACTGAGCTTGCTATTTGAAATATTAAACTATTCTC
AAACCTCAAAAAAAAAAAAAAAAAATCTTTGAAGTCAGGATTGCTCCATAGTTTAGGAAG
CTGTCATTGTAATTAGAAGTTTTTATAAATCGGTCAGTTTCAATTTTAAATATCTATATA
ATGCTTTTAATTAGGTGGCTTAAAATACTGTCATATATAGGATGTTTATTCACTTTCCTT
AAGACTATTGTATAATCAACTTGAAAAATAAACATC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTTTTTTTTTTTTTGACCATATTAAGTAACCATTTTGGTACTACTATCCAATAGGTACCA
CTGTAGGTTTTATACAGTGTGGAGCTGACTCAGTTGGCATTTTAGAATCTGTTAAAATTA
TATAGTTTTTCCATGAATACTTTGGAAAAAAAATTTCTGACTTAACCTTTTTACCACAAA
TATGCAAATGTAATTTTCTTGACTTCACAAATATTCTCTTCCCTTTTCAGGGGAAAAATC
TGAGGATGGGAGACTTAGGATAACCAGTGAAGTGATAGTTACCCAGATCTGGACCATTTC
ATGTTTGTTAAATTGGAATCTTCACTAGGTTCAAACTCAAATTTAAACTTCTTCACCTAC
TATTTAAATATTTTTAACATTAAATTCAAGTAATTTGTTGAAAGCCTGTAAAAAAGAGGG
TTGCAGTCATCTCTTATGCTATGCATGGGGTCTGATCTCAAATACACTAAATATGGGGTG
TAGAAACTAAAATGAAGCCTGCTATGTGAAACTACTTTCACTTATGGTCAATGGTTTTTG
TACCAATATTTTTTTATACACTTCAGTGCAAGTCCTGTCAGTTAACCTTACTTTATGAGT
AAGCTAAATAACCCAAATTACATTTAAGCCTGTTTTACTACTACGGCACTTTGAAAAATG
CTCAGAAACCAACTTCTTAATTGGCAAAAGGTTCCATGTACCATGTGCTGAAGCATCTAC
TTTAAATGTGGATATCTGTGAATGATAATGTTTTCCTTCATGTAAGTGCCTGTTCAGAGT
TTCAGAATTTAAAAATGCCAAATATTTTCATGGTCACTTGCATGTAGAAATCTGGAAAAT
ATTCAGAGAAAATCTGAAAACCAGTTGTATTTAACCGGCCTCAAATTGTGCAACCATGAT
GTAAAATAAAGAATTTGAAACAGGTACTGAGCTTGCTATTTGAAATATTAAACTATTCTC
AAACCTCAAAAAAAAAAAAAAAAAATCTTTGAAGTCAGGATTGCTCCATAGTTTAGGAAG
CTGTCATTGTAATTAGAAGTTTTTATAAATCGGTCAGTTTCAATTTTAAATATCTATATA
ATGCTTTTAATTAGGTGGCTTAAAATACTGTCATATATAGGATGTTTATTCACTTTCCTT
AAGACTATTGTATAATCAACTTGAAAAATAAACATC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
15-1175, gnl|bosTau2|chr28 (20347683-20346526) |
|
15-1175, gnl|canFam2|chr4 (23500649-23501888) |
|
15-1175, gnl|dasNov1|scaffold_120308 (7746-8866) |
|
15-1175, gnl|echTel1|scaffold_321826 (47088-45938) |
|
15-1175, gnl|galGal2|chr6 (10126854-10127982) |
|
15-1175, gnl|hg17|chr10 (70601518-70602665) |
|
15-1175, gnl|Hg17|chr10 (70601723-70602877) |
|
15-1175, gnl|loxAfr1|scaffold_60138 (12002-10839) |
|
15-1175, gnl|mm7|chr10 (61975029-61973973) |
|
15-1175, gnl|monDom2|scaffold_242 (260449-259359) |
|
15-1175, gnl|oryCun1|scaffold_82722 (1678-647) |
|
15-1175, gnl|panTro1|chr8_random (37904904-37906046) |
|
15-1175, gnl|rheMac2|chr9 (67854552-67853433) |
|
15-1175, gnl|rn3|chr20 (29722639-29721585) |
| |
|
749-989, gnl|bosTau2|chr16 (14682832-14682593) |
|
749-989, gnl|Hg17|chr10 (70602446-70602666) |
|
749-989, gnl|Mm7|chr10 (61974188-61973970) |
| |
|
758-922, gnl|bosTau2|chr11 (80410703-80410867) |
|
758-922, gnl|Mm7|chr10 (61974179-61974014) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
15-1175, gnl|bosTau2|chr28 (20347683-20346526) |
|
15-1175, gnl|canFam2|chr4 (23500649-23501888) |
|
15-1175, gnl|dasNov1|scaffold_120308 (7746-8866) |
|
15-1175, gnl|echTel1|scaffold_321826 (47088-45938) |
|
15-1175, gnl|galGal2|chr6 (10126854-10127982) |
|
15-1175, gnl|hg17|chr10 (70601518-70602665) |
|
15-1175, gnl|Hg17|chr10 (70601723-70602877) |
|
15-1175, gnl|loxAfr1|scaffold_60138 (12002-10839) |
|
15-1175, gnl|mm7|chr10 (61975029-61973973) |
|
15-1175, gnl|monDom2|scaffold_242 (260449-259359) |
|
15-1175, gnl|oryCun1|scaffold_82722 (1678-647) |
|
15-1175, gnl|panTro1|chr8_random (37904904-37906046) |
|
15-1175, gnl|rheMac2|chr9 (67854552-67853433) |
|
15-1175, gnl|rn3|chr20 (29722639-29721585) |
| |
|
749-989, gnl|bosTau2|chr16 (14682832-14682593) |
|
749-989, gnl|Hg17|chr10 (70602446-70602666) |
|
749-989, gnl|Mm7|chr10 (61974188-61973970) |
| |
|
758-922, gnl|bosTau2|chr11 (80410703-80410867) |
|
758-922, gnl|Mm7|chr10 (61974179-61974014) |
|
fco (0.628832) |
|
kid (0.518941) |
|
bfe (0.449573) |
|
ret (0.3862) |
|
lin (0.291206) |
|
med (0.232504) |
|
fcc (0.197785) |
|
aor (0.195274) |
|
ldo (0.194005) |
|
mgm (0.180343) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
rec (0.17307) |
|
eye (0.170503) |
|
fhi (0.169578) |
|
mga (0.160205) |
|
tbr (0.154178) |
|
lun (0.150489) |
|
fat (0.147427) |
|
ste (0.135208) |
|
sug (0.127291) |
|
bla (0.124347) |
|
eru (0.120048) |
|
eje (0.0988338) |
|
fco (0.628832) |
|
kid (0.518941) |
|
bfe (0.449573) |
|
ret (0.3862) |
|
lin (0.291206) |
|
med (0.232504) |
|
fcc (0.197785) |
|
aor (0.195274) |
|
ldo (0.194005) |
|
mgm (0.180343) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
rec (0.17307) |
|
eye (0.170503) |
|
fhi (0.169578) |
|
mga (0.160205) |
|
tbr (0.154178) |
|
lun (0.150489) |
|
fat (0.147427) |
|
ste (0.135208) |
|
sug (0.127291) |
|
bla (0.124347) |
|
eru (0.120048) |
|
eje (0.0988338) |
