Non-Coding RNA Search

Ss1.1-Pig4-TMW8056E04.5

Sequence:


               
               AAGTTAAGTTACATCCTAGATGTGGAGAAGCATGAAGGTCATTTTTTCTTAGACTCACCA
ACTTTTCCTGGGGTTTCGTGGGCTCTGGTCATGCCCATGGCTCTAGGGGCAAAAGGGAAG
GCTTCTTTCTGCCCTCCTCCTCCTTGTCTGATTCGCTCCTGAAATTTGGAAAGGACCAAA
TCACTCTGCAGTTTTTTTCCTTTGTGTCGTATCCTGAAATCTTGGAAAATTCTATAGAAT
GGTTCTGTATATAGGGCACAGGTAGAGGCATTGTCCCAAAGTTTATTTATTTAATCTATT
TATTACCTTATGCGAATGCTTTGCCATAACCACAGTTAACAGGGAAAAAAGACAAAAACC
CACACAACTCTCACAGACAGAAATTAATTCACTGACGGGATTTGCTTGACCTGACTTCCT
TGTTCTCGCTCTCTGCTGTATGATATAACAAGTGCTAAAAGTTCTCCAAGGCAATATGCA
CATTGGTACAAAGGATACTTTAGTGCTCCCTCTTAGGGAAGTCCCTGAAAAACTCTTTGG
TGCACAAAAGGGACGCCTATGGCCCCCAAACACCAAAGAACTTTAAGCAGTGGCCCCAAC
TGAGAGGCTTTCTGGGGGAGTCATGAATCAGTTGTGAATACATTCTTTGCTCGTTCCAAG
TGCTTGTTGACTAAACATGTGCCGTGATAGGTGTTAGTGGTAGACTCACAGAGATGCTTC
CTCAGGTGTCCGGGAAGCCCAGCATTTGCAACTCGCACGGCTTTTCGTTGCTGTTTCTCA
AGTCACTGTGTTTTAGAAACTAGGGTTTAAGACAAATAAATAATCTTACATCTTGGTGTG
TTTGCATTGTCTAATGACATACATCCTTCAGATCTCTCTCCACCTGAATAATTTAGACTG
ATTGTACGTGTCCATCCGTGCCATGGATAGGTGGGCTATAGTTGGACCAAAATAAATGAG
ACTTTGGAATCAAAGGATCTCAATACTTTCTGGCAGTCAGTCCCTCGCTCCTGGATGTGT
TCTGAGCAATGCAAATGTCTGTACCCTGGCGGCATAGTCGGTGTCCTTAATATTGTAGTA
TTTACAGCCCTGTATGGTTTATGATGCAAAGCTGCCAAGATGTGGGTGTCACTGTGTGGC
TTCTGAAAGCGGGGTGAATTTTCTGCAGCTGGTTCAAAGTTGTGGTGTGTCCTTGAATCC
TCTCTTAATTGCTGTGTGTGAGCCAGAGGGAGCTGTGATCAGGGTGGGCCCCCAGCCTGC
AGGGAACTTTCTGGACTCTCTGCTCTTTGAATTGATGGAGGCATTTGGGCTCGCTACTTG
ACCATTCTCACCCTGTGAAACGTCCCGCGCTTTGAAGCAAATACAATTCACAGCACAGTG
CACACAAAAACCTTGGCATAAGACAGAGAAGGTTCTTCTTATTCTGTGGACTGGTTGCTG
TGGAAACAGATAACAAAGGGCAGCCTTCCACTTCTGGTATAATTGTGTAGCCCCCTTTTC
TCTGGGCTTGACACCTGTCTGAATAAGAATGATTAGAGCTGAATAATATCCTTCTCTTGG
TTATTGAATATGTGGTTCACGTACAAAACTCTGTGTAAGTTGAAGAAGTGTTCGTGTTCA
TATGTACTTGTTTGCTACATTTTTGAGGTTTTGTAAAACTGTATTTTTTTTTTTCACAAT
GTGAAACTGAAGGTCAAATAAATTATTAGAGATTTTCTCTTAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGTTAAGTTACATCCTAGATGTGGAGAAGCATGAAGGTCATTTTTTCTTAGACTCACCA
ACTTTTCCTGGGGTTTCGTGGGCTCTGGTCATGCCCATGGCTCTAGGGGCAAAAGGGAAG
GCTTCTTTCTGCCCTCCTCCTCCTTGTCTGATTCGCTCCTGAAATTTGGAAAGGACCAAA
TCACTCTGCAGTTTTTTTCCTTTGTGTCGTATCCTGAAATCTTGGAAAATTCTATAGAAT
GGTTCTGTATATAGGGCACAGGTAGAGGCATTGTCCCAAAGTTTATTTATTTAATCTATT
TATTACCTTATGCGAATGCTTTGCCATAACCACAGTTAACAGGGAAAAAAGACAAAAACC
CACACAACTCTCACAGACAGAAATTAATTCACTGACGGGATTTGCTTGACCTGACTTCCT
TGTTCTCGCTCTCTGCTGTATGATATAACAAGTGCTAAAAGTTCTCCAAGGCAATATGCA
CATTGGTACAAAGGATACTTTAGTGCTCCCTCTTAGGGAAGTCCCTGAAAAACTCTTTGG
TGCACAAAAGGGACGCCTATGGCCCCCAAACACCAAAGAACTTTAAGCAGTGGCCCCAAC
TGAGAGGCTTTCTGGGGGAGTCATGAATCAGTTGTGAATACATTCTTTGCTCGTTCCAAG
TGCTTGTTGACTAAACATGTGCCGTGATAGGTGTTAGTGGTAGACTCACAGAGATGCTTC
CTCAGGTGTCCGGGAAGCCCAGCATTTGCAACTCGCACGGCTTTTCGTTGCTGTTTCTCA
AGTCACTGTGTTTTAGAAACTAGGGTTTAAGACAAATAAATAATCTTACATCTTGGTGTG
TTTGCATTGTCTAATGACATACATCCTTCAGATCTCTCTCCACCTGAATAATTTAGACTG
ATTGTACGTGTCCATCCGTGCCATGGATAGGTGGGCTATAGTTGGACCAAAATAAATGAG
ACTTTGGAATCAAAGGATCTCAATACTTTCTGGCAGTCAGTCCCTCGCTCCTGGATGTGT
TCTGAGCAATGCAAATGTCTGTACCCTGGCGGCATAGTCGGTGTCCTTAATATTGTAGTA
TTTACAGCCCTGTATGGTTTATGATGCAAAGCTGCCAAGATGTGGGTGTCACTGTGTGGC
TTCTGAAAGCGGGGTGAATTTTCTGCAGCTGGTTCAAAGTTGTGGTGTGTCCTTGAATCC
TCTCTTAATTGCTGTGTGTGAGCCAGAGGGAGCTGTGATCAGGGTGGGCCCCCAGCCTGC
AGGGAACTTTCTGGACTCTCTGCTCTTTGAATTGATGGAGGCATTTGGGCTCGCTACTTG
ACCATTCTCACCCTGTGAAACGTCCCGCGCTTTGAAGCAAATACAATTCACAGCACAGTG
CACACAAAAACCTTGGCATAAGACAGAGAAGGTTCTTCTTATTCTGTGGACTGGTTGCTG
TGGAAACAGATAACAAAGGGCAGCCTTCCACTTCTGGTATAATTGTGTAGCCCCCTTTTC
TCTGGGCTTGACACCTGTCTGAATAAGAATGATTAGAGCTGAATAATATCCTTCTCTTGG
TTATTGAATATGTGGTTCACGTACAAAACTCTGTGTAAGTTGAAGAAGTGTTCGTGTTCA
TATGTACTTGTTTGCTACATTTTTGAGGTTTTGTAAAACTGTATTTTTTTTTTTCACAAT
GTGAAACTGAAGGTCAAATAAATTATTAGAGATTTTCTCTTAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57042948|ref|XP_549584.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57042948|ref|XP_549584.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1415-1533, + strand, RNAz p=0.714783

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1415-1533, + strand, RNAz p=0.714783

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_003633, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_003633, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-1721, gnl|bosTau2|chr25 (13285976-13284253)
               

               
               6-1721, gnl|Hg17|chr5 (73960706-73958992)
               

               
               6-1721, gnl|Mm7|chr13 (94321823-94323442)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-1721, gnl|bosTau2|chr25 (13285976-13284253)
               

               
               6-1721, gnl|Hg17|chr5 (73960706-73958992)
               

               
               6-1721, gnl|Mm7|chr13 (94321823-94323442)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               cbr (2.43153)
               

               
               fcc (0.791139)
               

               
               ecc (0.575175)
               

               
               ova (0.387397)
               

               
               fco (0.314416)
               

               
               ebs (0.236602)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               cje (0.165235)
               

               
               lyg (0.133103)
               

               
               tra (0.123092)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (2.43153)
               

               
               fcc (0.791139)
               

               
               ecc (0.575175)
               

               
               ova (0.387397)
               

               
               fco (0.314416)
               

               
               ebs (0.236602)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               cje (0.165235)
               

               
               lyg (0.133103)
               

               
               tra (0.123092)

	6-1721, gnl\|bosTau2\|chr25 (13285976-13284253)
	6-1721, gnl\|Hg17\|chr5 (73960706-73958992)
	6-1721, gnl\|Mm7\|chr13 (94321823-94323442)

	cbr (2.43153)
	fcc (0.791139)
	ecc (0.575175)
	ova (0.387397)
	fco (0.314416)
	ebs (0.236602)
	nlu (0.191681)
	fty (0.17584)
	duo (0.172801)
	cje (0.165235)
	lyg (0.133103)
	tra (0.123092)