Non-Coding RNA Search

Ss1.1-Pig4-TMW8056F05.5

Sequence:


               
               GACTTTCTTAGATTTACAATTTGGTAGGGTGATTAATAACACTCTCACCTTCCAAAGAAA
CTTTTTTGAAAATTACTAAATTACCTGTTCAAAAATAAGACTTGTTGGAAGTCCAGTCCA
TCCATAATTTCAGAAAACTAGTTTAGATGTAATTTGGTAGCCACAATTGTCATACCCCAT
TCTAGAAGGAGAAAACTTCCTTGAACAAGATGAACTAAAAATTCTGATTAATTCTAAATC
TGACTTAATGACAAACCTATCATAATTTCATAAAACTATGGCCTATTTAGGTGGAGCTTT
GTGTATGGGGGTAGGGGTATGTATGGCATGTTTTCTTGAAATGATGTTTCTTTGAATACC
CAAAAATTCTGTACATAGAAATGCTCTTTGGAACAAGTCTATCGACTGACCATGATCATT
CTAGTGTATGTGTGCTCAGTAGGCTGGCCTTGGTCCTCAGGGACAGTGTGTGACTCCAGT
GGTCTACCTAACTAGTCTTTTGCCTAGGGGCATCTGGGTCCTCTGCTGGTTTAATGACAA
ATAATATTATGTCGGGTTATGCTTCCTTTGTTACTTGTTGATTTTCCTACTAAATGTAGC
ATTTTGATTAGATCCAACCTCTTAAATTTTGAGATAATTGTAAAAAGAATGAAATTATGC
AGAAATGGCCAATATCTTTTATTGATCTGTTCTTTTGGAAACTGTCATGCACTATAAATT
GTGTACAGTTAAAAAAATATATATATATATTCTTACATGAGTAAAAAGCACCCTCTCCAG
CAATTGTATGTCATTGGTATTTGAAGAGAATTCCCAAATAACTCATTGCTGCTGCTGCTG
CTGCTGCTGTTTTTGGTTTGTGTGGGTTTTTTGTTTTGTTTTGTTTTTGTGTGGTAAATT
GATATTTTTAAAAAAAAAAAAAAAGGAAAGGAGAAAAAACACGACTACTGTTTACAGACT
GAAGAATTATTGCTTTTTATACTACTGAGATCCTAAGTTAAGACTCTCCAAAGCAAACAT
TTGGTTTAAATCATTTATCTGATGTGGATAAAAGGTAGAGAAATTTTTAGTGTTCTCCAC
ATAAATGTACAAATGCCTAGCTGTATTGCCCATCAATTTTGTATATTTTCATAATTTTAA
TTGTTCAAAATTGCATTATATTTTGCAATCACTATGTTCAATCTGGATTTGTCTTTCATT
TTAATATAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACTTTCTTAGATTTACAATTTGGTAGGGTGATTAATAACACTCTCACCTTCCAAAGAAA
CTTTTTTGAAAATTACTAAATTACCTGTTCAAAAATAAGACTTGTTGGAAGTCCAGTCCA
TCCATAATTTCAGAAAACTAGTTTAGATGTAATTTGGTAGCCACAATTGTCATACCCCAT
TCTAGAAGGAGAAAACTTCCTTGAACAAGATGAACTAAAAATTCTGATTAATTCTAAATC
TGACTTAATGACAAACCTATCATAATTTCATAAAACTATGGCCTATTTAGGTGGAGCTTT
GTGTATGGGGGTAGGGGTATGTATGGCATGTTTTCTTGAAATGATGTTTCTTTGAATACC
CAAAAATTCTGTACATAGAAATGCTCTTTGGAACAAGTCTATCGACTGACCATGATCATT
CTAGTGTATGTGTGCTCAGTAGGCTGGCCTTGGTCCTCAGGGACAGTGTGTGACTCCAGT
GGTCTACCTAACTAGTCTTTTGCCTAGGGGCATCTGGGTCCTCTGCTGGTTTAATGACAA
ATAATATTATGTCGGGTTATGCTTCCTTTGTTACTTGTTGATTTTCCTACTAAATGTAGC
ATTTTGATTAGATCCAACCTCTTAAATTTTGAGATAATTGTAAAAAGAATGAAATTATGC
AGAAATGGCCAATATCTTTTATTGATCTGTTCTTTTGGAAACTGTCATGCACTATAAATT
GTGTACAGTTAAAAAAATATATATATATATTCTTACATGAGTAAAAAGCACCCTCTCCAG
CAATTGTATGTCATTGGTATTTGAAGAGAATTCCCAAATAACTCATTGCTGCTGCTGCTG
CTGCTGCTGTTTTTGGTTTGTGTGGGTTTTTTGTTTTGTTTTGTTTTTGTGTGGTAAATT
GATATTTTTAAAAAAAAAAAAAAAGGAAAGGAGAAAAAACACGACTACTGTTTACAGACT
GAAGAATTATTGCTTTTTATACTACTGAGATCCTAAGTTAAGACTCTCCAAAGCAAACAT
TTGGTTTAAATCATTTATCTGATGTGGATAAAAGGTAGAGAAATTTTTAGTGTTCTCCAC
ATAAATGTACAAATGCCTAGCTGTATTGCCCATCAATTTTGTATATTTTCATAATTTTAA
TTGTTCAAAATTGCATTATATTTTGCAATCACTATGTTCAATCTGGATTTGTCTTTCATT
TTAATATAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               8-1204, gnl|bosTau2|chr17 (36853405-36852221)
               

               
               8-1204, gnl|Hg17|chr12 (110928581-110927392)
               

               
               8-1204, gnl|Mm7|chr5 (120675261-120676365)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-1204, gnl|bosTau2|chr17 (36853405-36852221)
               

               
               8-1204, gnl|Hg17|chr12 (110928581-110927392)
               

               
               8-1204, gnl|Mm7|chr5 (120675261-120676365)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

Help | Less info


               
               mgp (0.461361)
               

               
               spc (0.340097)
               

               
               cte (0.29274)
               

               
               thg (0.253582)
               

               
               nms (0.213858)
               

               
               sto (0.179824)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               ldo (0.0970026)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.461361)
               

               
               spc (0.340097)
               

               
               cte (0.29274)
               

               
               thg (0.253582)
               

               
               nms (0.213858)
               

               
               sto (0.179824)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               ldo (0.0970026)

	8-1204, gnl\|bosTau2\|chr17 (36853405-36852221)
	8-1204, gnl\|Hg17\|chr12 (110928581-110927392)
	8-1204, gnl\|Mm7\|chr5 (120675261-120676365)

	mgp (0.461361)
	spc (0.340097)
	cte (0.29274)
	thg (0.253582)
	nms (0.213858)
	sto (0.179824)
	mga (0.160205)
	bfe (0.149858)
	liv (0.146284)
	lin (0.145603)
	spl (0.143184)
	cst (0.140036)
	lyg (0.133103)
	kid (0.129735)
	ova (0.129132)
	tra (0.123092)
	ldo (0.0970026)