Ss1.1-Pig4-TMW8056F17.3
|
AGGTCCTCTGATGTCCTCTCTCTGGCTCCCCTCTCTCCTTCCTGACTCCTCCTGCTCTCT
GATCTGTTTCCTTCACCCCTCCACCCGCTCTGCCTCCCTTCCTGTTTTGTTTGGTTGCCA
CATCCTGTTTGGACGCCTCTTCTTTTTTTTCATGTTCTGCGTGGGGGCTCGTTTCAGGTC
CTGATCATCCTATTGGTTTTCTCTGCCTTCTTCCTGACCCGCCTCTTCCCCGTTTCCCTC
TGATCCATCCCGAGCCCTGAGACATCTCCCTTCGCTGCCCCACTGCCCCCCTCCCACGTC
CAAAGGTGCTGAGCCCCAGAAGGTGCTGAGCCCCACGTCACACACCCTTTTGCAGCTCTT
CATCCCCTGGGCCTCCAGAGGGGCCTCATTGCCAAAGCATGCCTGCCCGTCCTGGCTGTG
CCTTAGTTGGTGTGTATGTGTTTGTGCTTGTGTTTGGGGGGCGGGGGTGGGTAGCTAGGG
ATCGGGCCCCCTTTCTCTCAGGAGGGAGGGGTATACAATGCACCTTGCCTCCTTAAGTTC
AAAAATAAAATGCTGGAGGTCAGGAATTCCCAGTGGGCTGGAGGCTTCAAGCATAGATCC
TGGCGCCCTAGGCCCCACCTGGTGCTCAGCCTCGCCTGGGATTGGATCCAGAATTTTTGC
CGAGCTTCCAAAAGCCCACTGCCTACAGGCCATCTTAAAGGAAGCAAGGACTGGAGGCCT
TCCATCCCGGCTACTCCCTGAGGTGCCAAAAAAGGAGCTGGCAAAAAGTGCAGGGTCTTG
GAGTGAAATAGGTGTGAGGGGCAGTGATGCCGCCCTCCAGCCTCAGTGTTAAAAATAGTA
TCTCCTGCCTTTTGCCGGAGAAGAAAAAAAATGGCCACTGCCAGCCTTAAAGCTGATATT
AAGCTGATATTCTTTTTTTTTTTTTTTTTCAAAACATTTATTTCGGGGGGTGGGGAATGG
TTGCTGTGCCAATGTGAAAAGAATTGCCTTGCTTGAGTGTGTGGTGCACACACGTGTTTC
TGCGTGCTAGTTTGCTTTCTGCTGCTGCTTCCTGCTTCTCTGGGACTCACACGCCTAACA
TGATCTATATAAATGTATAAATATATATTTTATTTTTTTTTAATTCCCCGGAGCTTCTGG
TTCCCATCAGGCCTTGCTGTCAATCAGAGAGAGAAGCCTTGTCCCTTCTCCCACATCCAT
CATGTTCATTTTTTAAAAAAACTCAATATAAAGATAAAAGAAAGACTTGTGCTTGCTTTA
TTATCGGGATGGGCTCCAGAAAAGAGGGCAAGGCCCAGATTCCTGCGTCTGGTAGGAGAA
AGGGGCTGGAGCCAAGAGAACTTTGGTCTCATGAGGAGGGGTAGGGGAGATGGACTACCT
GTGTCTGGATTTTCTAAATTACTCACTCAAATCAGGAGAGCTAGTTGGAATAGAAATGAA
CAAGATTTCTCCTTTGTGGAAGTTGCATGAGCACTTCAGAAATTCAGTGTTTTGTTCTCA
ATGTGCAGCATCTTTCCTCCAAAATCAGTGCTTTTCTGGCTCCCCACTTCTCAGGAATAA
GCTCTCAGGGCTGAAAACCCAGGCACTCGTTCTTACCAGTCAGTCAGTGGCTGGTCACAT
ACTGTCTCTTCCTCCTCTTAAATCCTATTTTTATCTGTCCCATTCTCCACAAGTTCCTTT
CATTTTGTTTCATTTGAGCTATGGCCCTGGCCTCCTTCATCCCACCTCTAGCGCATCCTG
GCCCTCCTGGAGGGATACTCTGCTTTCAACGTCCAGATCTGATCCTGCCCTCCCCTGCTC
AAATCCTTCTAG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGGTCCTCTGATGTCCTCTCTCTGGCTCCCCTCTCTCCTTCCTGACTCCTCCTGCTCTCT
GATCTGTTTCCTTCACCCCTCCACCCGCTCTGCCTCCCTTCCTGTTTTGTTTGGTTGCCA
CATCCTGTTTGGACGCCTCTTCTTTTTTTTCATGTTCTGCGTGGGGGCTCGTTTCAGGTC
CTGATCATCCTATTGGTTTTCTCTGCCTTCTTCCTGACCCGCCTCTTCCCCGTTTCCCTC
TGATCCATCCCGAGCCCTGAGACATCTCCCTTCGCTGCCCCACTGCCCCCCTCCCACGTC
CAAAGGTGCTGAGCCCCAGAAGGTGCTGAGCCCCACGTCACACACCCTTTTGCAGCTCTT
CATCCCCTGGGCCTCCAGAGGGGCCTCATTGCCAAAGCATGCCTGCCCGTCCTGGCTGTG
CCTTAGTTGGTGTGTATGTGTTTGTGCTTGTGTTTGGGGGGCGGGGGTGGGTAGCTAGGG
ATCGGGCCCCCTTTCTCTCAGGAGGGAGGGGTATACAATGCACCTTGCCTCCTTAAGTTC
AAAAATAAAATGCTGGAGGTCAGGAATTCCCAGTGGGCTGGAGGCTTCAAGCATAGATCC
TGGCGCCCTAGGCCCCACCTGGTGCTCAGCCTCGCCTGGGATTGGATCCAGAATTTTTGC
CGAGCTTCCAAAAGCCCACTGCCTACAGGCCATCTTAAAGGAAGCAAGGACTGGAGGCCT
TCCATCCCGGCTACTCCCTGAGGTGCCAAAAAAGGAGCTGGCAAAAAGTGCAGGGTCTTG
GAGTGAAATAGGTGTGAGGGGCAGTGATGCCGCCCTCCAGCCTCAGTGTTAAAAATAGTA
TCTCCTGCCTTTTGCCGGAGAAGAAAAAAAATGGCCACTGCCAGCCTTAAAGCTGATATT
AAGCTGATATTCTTTTTTTTTTTTTTTTTCAAAACATTTATTTCGGGGGGTGGGGAATGG
TTGCTGTGCCAATGTGAAAAGAATTGCCTTGCTTGAGTGTGTGGTGCACACACGTGTTTC
TGCGTGCTAGTTTGCTTTCTGCTGCTGCTTCCTGCTTCTCTGGGACTCACACGCCTAACA
TGATCTATATAAATGTATAAATATATATTTTATTTTTTTTTAATTCCCCGGAGCTTCTGG
TTCCCATCAGGCCTTGCTGTCAATCAGAGAGAGAAGCCTTGTCCCTTCTCCCACATCCAT
CATGTTCATTTTTTAAAAAAACTCAATATAAAGATAAAAGAAAGACTTGTGCTTGCTTTA
TTATCGGGATGGGCTCCAGAAAAGAGGGCAAGGCCCAGATTCCTGCGTCTGGTAGGAGAA
AGGGGCTGGAGCCAAGAGAACTTTGGTCTCATGAGGAGGGGTAGGGGAGATGGACTACCT
GTGTCTGGATTTTCTAAATTACTCACTCAAATCAGGAGAGCTAGTTGGAATAGAAATGAA
CAAGATTTCTCCTTTGTGGAAGTTGCATGAGCACTTCAGAAATTCAGTGTTTTGTTCTCA
ATGTGCAGCATCTTTCCTCCAAAATCAGTGCTTTTCTGGCTCCCCACTTCTCAGGAATAA
GCTCTCAGGGCTGAAAACCCAGGCACTCGTTCTTACCAGTCAGTCAGTGGCTGGTCACAT
ACTGTCTCTTCCTCCTCTTAAATCCTATTTTTATCTGTCCCATTCTCCACAAGTTCCTTT
CATTTTGTTTCATTTGAGCTATGGCCCTGGCCTCCTTCATCCCACCTCTAGCGCATCCTG
GCCCTCCTGGAGGGATACTCTGCTTTCAACGTCCAGATCTGATCCTGCCCTCCCCTGCTC
AAATCCTTCTAG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
36-922, gnl|bosTau2|chr18 (52842997-52842130) |
|
36-922, gnl|Hg17|chr19 (59069682-59071109) |
|
36-922, gnl|Mm7|chrUn_random (1689305-1688255) |
| |
|
943-1452, gnl|bosTau2|chr18 (52842045-52841533) |
|
943-1452, gnl|canFam2|chr1 (106396671-106397018) |
|
943-1452, gnl|echTel1|scaffold_269949 (4309-4652) |
|
943-1452, gnl|Hg17|chr19 (59071189-59071803) |
|
943-1452, gnl|hg17|chr2 (33861669-33862027) |
|
943-1452, gnl|loxAfr1|scaffold_188132 (723-1074) |
|
943-1452, gnl|mm7|chrUn_random (1687754-1688033) |
|
943-1452, gnl|Mm7|chrUn_random (1688101-1687564) |
|
943-1452, gnl|panTro1|chr12 (34892082-34892455) |
|
943-1452, gnl|rheMac2|chr13 (33711070-33711432) |
|
943-1452, gnl|rn3|chr1 (64255651-64255963) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
36-922, gnl|bosTau2|chr18 (52842997-52842130) |
|
36-922, gnl|Hg17|chr19 (59069682-59071109) |
|
36-922, gnl|Mm7|chrUn_random (1689305-1688255) |
| |
|
943-1452, gnl|bosTau2|chr18 (52842045-52841533) |
|
943-1452, gnl|canFam2|chr1 (106396671-106397018) |
|
943-1452, gnl|echTel1|scaffold_269949 (4309-4652) |
|
943-1452, gnl|Hg17|chr19 (59071189-59071803) |
|
943-1452, gnl|hg17|chr2 (33861669-33862027) |
|
943-1452, gnl|loxAfr1|scaffold_188132 (723-1074) |
|
943-1452, gnl|mm7|chrUn_random (1687754-1688033) |
|
943-1452, gnl|Mm7|chrUn_random (1688101-1687564) |
|
943-1452, gnl|panTro1|chr12 (34892082-34892455) |
|
943-1452, gnl|rheMac2|chr13 (33711070-33711432) |
|
943-1452, gnl|rn3|chr1 (64255651-64255963) |
|
jca (0.683761) |
|
amn (0.417711) |
|
elu (0.385356) |
|
lnt (0.284616) |
|
cov (0.264306) |
|
ese (0.253004) |
|
ece (0.229305) |
|
hea (0.204499) |
|
nlu (0.191681) |
|
sto (0.179824) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
mcp (0.170648) |
|
cki (0.165235) |
|
hyp (0.142837) |
|
che (0.136314) |
|
pla (0.133672) |
|
eep (0.122564) |
|
cly (0.120642) |
|
eru (0.120048) |
|
clu (0.119646) |
|
med (0.116252) |
|
eje (0.0988338) |
|
jca (0.683761) |
|
amn (0.417711) |
|
elu (0.385356) |
|
lnt (0.284616) |
|
cov (0.264306) |
|
ese (0.253004) |
|
ece (0.229305) |
|
hea (0.204499) |
|
nlu (0.191681) |
|
sto (0.179824) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
mcp (0.170648) |
|
cki (0.165235) |
|
hyp (0.142837) |
|
che (0.136314) |
|
pla (0.133672) |
|
eep (0.122564) |
|
cly (0.120642) |
|
eru (0.120048) |
|
clu (0.119646) |
|
med (0.116252) |
|
eje (0.0988338) |
