Non-Coding RNA Search

Ss1.1-Pig4-TMW8056F21.3

Sequence:


               
               CTTGCGTTGGCATAATGAGGAACAGGCGGGAAAAGACTTTACTAAATTCTTATCACAGAT
TTCTAGTCAATGTGTTCTTAAACTGGGTGGAGAAAAAAATGGAAAACCTTCAAGACCTCG
TCTGAGCAAATGGCAACAACTTACAAGATCAAATTTCAGTGACTTGATTCTTTCTAAAGA
TGAAATGGGATTGTTTTTTACTTGTCTTCCTTGTTGGGATAATTATATTTAAACCATTCT
TATTGTTTGTGACAAATGCCTAACACTTGGTACAGTCATTTCTCACCTGTCTCCTAATGA
TTTATCTAGCACCATCTGGGCTCCTGCAGCCTCATTGTTTAATCAGGCCCCGGCCACTTA
ATATTCCTGACCAAGTCTGGATAGATTTGGACCCAGATGTGGATCGGAGTGATTCTCTTG
ATGTTTACATGTATCTCTGTGTCTCCATCATTCCAAAGTGAAATGTACATGGTTTAGAAT
AACTGATTTTGTAAACACTCTACTTGGGAGACACATCGAGCGTTAACTGTAGTGGAAGCT
CTTTGTTCCAGGATAGTGATGGTCTGCATCGGTTTCTCACATGAAAGGAAATGTGGAAGC
TCAGGGTTCATGTGTTGGTTGTTTTGGTTTTTCTTTGCTCAATTTGGATTGTAATCATGT
CATTCAGAAACTTGAAGTGCAGATGCATCGTGCTGCTAACACGTGATGTTGAGACCTCAC
TCAATTCCAGCAGCTCCTCACCATGACTGCATTCTGAAATACTTCTCTCTCTCCCCCCGG
AGATACTTACAATGTAGTGCCTCCTGCTAAGCAGTGGTTCTCCTGTTTGATGGTAAGATT
CCAGTTCTGTCTCTACTGAGTGAAGAAACCACGGGTCTAATACAGTGAGCGTTTCCTGCT
CTTTACCGGGTTCTGCCTGCGGCCCTGTGGACATTTGTTCCTTGCTACGTTGCACTTCAG
TACCTTTCCAGACTGAAGTTTCATTACTAATGTTTTGGTATGACTGATGCTGGAATCTTA
TCATTTGAATTTTTTTTTTTTAAACTTTTACAGTAAAACCTCGTTAATTCCTCCTGGAAT
TGAAGATAATGAATTAAGCTGAAGGGTTTGCTGAAGCAAATTAATAGTATGTAAGGAGGC
CTGTTGTGTCTGAACTACTTAAATAATTTTAACACTTTTTAAAAGCACCCTTTTAAAGGT
TCCCCGGTGGTCACCACTGCAGCCCAGGTTCAATCCCTGGTCTGGGAACTGGTATCCCAC
ATCAGGCCACCACATGCTGCAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGCGTTGGCATAATGAGGAACAGGCGGGAAAAGACTTTACTAAATTCTTATCACAGAT
TTCTAGTCAATGTGTTCTTAAACTGGGTGGAGAAAAAAATGGAAAACCTTCAAGACCTCG
TCTGAGCAAATGGCAACAACTTACAAGATCAAATTTCAGTGACTTGATTCTTTCTAAAGA
TGAAATGGGATTGTTTTTTACTTGTCTTCCTTGTTGGGATAATTATATTTAAACCATTCT
TATTGTTTGTGACAAATGCCTAACACTTGGTACAGTCATTTCTCACCTGTCTCCTAATGA
TTTATCTAGCACCATCTGGGCTCCTGCAGCCTCATTGTTTAATCAGGCCCCGGCCACTTA
ATATTCCTGACCAAGTCTGGATAGATTTGGACCCAGATGTGGATCGGAGTGATTCTCTTG
ATGTTTACATGTATCTCTGTGTCTCCATCATTCCAAAGTGAAATGTACATGGTTTAGAAT
AACTGATTTTGTAAACACTCTACTTGGGAGACACATCGAGCGTTAACTGTAGTGGAAGCT
CTTTGTTCCAGGATAGTGATGGTCTGCATCGGTTTCTCACATGAAAGGAAATGTGGAAGC
TCAGGGTTCATGTGTTGGTTGTTTTGGTTTTTCTTTGCTCAATTTGGATTGTAATCATGT
CATTCAGAAACTTGAAGTGCAGATGCATCGTGCTGCTAACACGTGATGTTGAGACCTCAC
TCAATTCCAGCAGCTCCTCACCATGACTGCATTCTGAAATACTTCTCTCTCTCCCCCCGG
AGATACTTACAATGTAGTGCCTCCTGCTAAGCAGTGGTTCTCCTGTTTGATGGTAAGATT
CCAGTTCTGTCTCTACTGAGTGAAGAAACCACGGGTCTAATACAGTGAGCGTTTCCTGCT
CTTTACCGGGTTCTGCCTGCGGCCCTGTGGACATTTGTTCCTTGCTACGTTGCACTTCAG
TACCTTTCCAGACTGAAGTTTCATTACTAATGTTTTGGTATGACTGATGCTGGAATCTTA
TCATTTGAATTTTTTTTTTTTAAACTTTTACAGTAAAACCTCGTTAATTCCTCCTGGAAT
TGAAGATAATGAATTAAGCTGAAGGGTTTGCTGAAGCAAATTAATAGTATGTAAGGAGGC
CTGTTGTGTCTGAACTACTTAAATAATTTTAACACTTTTTAAAAGCACCCTTTTAAAGGT
TCCCCGGTGGTCACCACTGCAGCCCAGGTTCAATCCCTGGTCTGGGAACTGGTATCCCAC
ATCAGGCCACCACATGCTGCAGCC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               270-1170, gnl|bosTau2|chr20 (26522828-26521936)
               

               
               270-1170, gnl|Hg17|chr11 (111117290-111116414)
               

               
               270-1170, gnl|Mm7|chr9 (50858682-50859478)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               270-1170, gnl|bosTau2|chr20 (26522828-26521936)
               

               
               270-1170, gnl|Hg17|chr11 (111117290-111116414)
               

               
               270-1170, gnl|Mm7|chr9 (50858682-50859478)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               nmm (0.132802)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)
               

               
               cty (0.10408)

	270-1170, gnl\|bosTau2\|chr20 (26522828-26521936)
	270-1170, gnl\|Hg17\|chr11 (111117290-111116414)
	270-1170, gnl\|Mm7\|chr9 (50858682-50859478)