Ss1.1-Pig4-TMW8056G02.3
|
TGCTTAGCCGGCGCCAGACCGACCCTCGACTTCGGAGAGGCAGCGCCGTTCCTTTGGGCG
CTTCCCCCTCGGTGCCTTCGGCTCCTTCAGCCTCCTCGGCCGCCTTACCGCCCGCGGGGA
CCCGGGAGCTCGGTGTATGCCCCACCCCTGACCCCGCTAGAGACATGTCCACCCCGGCTC
GGCGGCGCCTCATGAGGGACTTCAAGAGGTTGCAGGAAGATCCTCCAGCCGGAGTCAGCG
GGGCTCCGTCCGAGAACAACATCATGGTTTGGAACGCGGTCATTTTTGGGCCCGAAGGGA
CCCCGTTTGAGGATGGAACCTTTAAGCTTACAATAGAATTCACTGAAGAATATCCAAATA
AGCCACCAACAGTTAGATTTGTCTCTAAGATGTTTCATCCAAATGTCTATGCAGATGGTA
GCATATGTCTGGACATACTTCAGAACCGTTGGAGTCCAACCTATGATGTGTCTTCCATTT
TAACATCCATACAGTCTCTATTGGACGAACCTAATCCCAATAGTCCAGCAAACAGCCAGG
CTGCTCAGCTGTACCAAGAGAACAAGCGCGAGTATGAAAAACGTGTTTCTGCGATAGTAG
AACAGAGCTGGCGTGACTGTTGACCCGGGTGCAGGAAAAGAAGCAGCTGGTCATGAGAAA
ACTATATATTGATGTGTTTGTCACCTTCCTATTCTTCAGTGTCATTACATTTACTTTATT
AAAAGCAAAATAGCTGTTGTGCTGTTTCCATCTTCCCTTGCCAAGCTTTTCCTACCCTTT
CTACCCTCTCCTTAAACTTCAGAAAACACCCTCTGAGATCAAATGTACTGTACCTGGGTT
ACGTGCAAAAATTACTGATGCTTAATTCCTTTTCTGTTGTATCTCGTTTCCAGTTTTAGG
GCAGTATTGTATTACTGTACTTTACACTAAGCTTTTAAAATGAATTGTTTTACAAGTGGT
GCTTTTGCATAGCTTGATGACCAGAATGTTATTTTTAACAGAATGATTGCTGGTGTTTCA
TCCTGGCTGGTCCTTCATTTGTGCTGGATTTAACAGTGACATTTTGGAATACGGCCTATA
GAAAACAGGGAAATAAATCCATATAAACATCCATTTTGAAAGAGCAATGGCAGCTAAAAA
GGCTGTGATACTAAGATTTAACCGTCATGAATTACAAGATTTTTCCCCCCCACTGGTAGG
AAGGAGACTGTTAAAGGACTCAGTCAAAGGAATGCAGCAATTTAGTAACTGACACATCCT
CTCCTTGCAGGGTATTCACTGGAGACACCCATGCAAAGTTGCAGAATACTAAAGTCTTCT
GGATGTTCACTTTTTAAAGAGGTGTGGGAGCAGAGGAATGGAAACAATCATTAGTTTTTC
AGCTAGGGAAGGTTGGAGATCCTTTAATCTTTTTAAAGGAGCAGTGCTACCCTAGATAAA
CAAGTTTATAATCCCCCATTGTTTTTTAGAGTTTTAATTAACCCAAGGAAGGGAACATAT
CTGTGGCAAACTATTTTCCACTGAAATCCTCAGTTAATGCTGCATGCTTTAGTTTCTTCC
TCCCTTTCAGTATTGTAAGAACTTTGAAGTCAATGTTTGCAGTCTTTCTTTGGATATTTA
TACTTTTAGATAGTATCTTTAAGTAGCAGTGTGGGACAAGGCTTGTAAATGTTTTGTCTG
ATGTTCCATTGTCACCTTTTGTGCATTTATCACTCTTCTAAACCTAACTTTGCACAAGTA
ACCCATGTAAAAAATGTACATTTTTCAAAACTTGTAAATAAAAATAACCTTAAAAAAAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TGCTTAGCCGGCGCCAGACCGACCCTCGACTTCGGAGAGGCAGCGCCGTTCCTTTGGGCG
CTTCCCCCTCGGTGCCTTCGGCTCCTTCAGCCTCCTCGGCCGCCTTACCGCCCGCGGGGA
CCCGGGAGCTCGGTGTATGCCCCACCCCTGACCCCGCTAGAGACATGTCCACCCCGGCTC
GGCGGCGCCTCATGAGGGACTTCAAGAGGTTGCAGGAAGATCCTCCAGCCGGAGTCAGCG
GGGCTCCGTCCGAGAACAACATCATGGTTTGGAACGCGGTCATTTTTGGGCCCGAAGGGA
CCCCGTTTGAGGATGGAACCTTTAAGCTTACAATAGAATTCACTGAAGAATATCCAAATA
AGCCACCAACAGTTAGATTTGTCTCTAAGATGTTTCATCCAAATGTCTATGCAGATGGTA
GCATATGTCTGGACATACTTCAGAACCGTTGGAGTCCAACCTATGATGTGTCTTCCATTT
TAACATCCATACAGTCTCTATTGGACGAACCTAATCCCAATAGTCCAGCAAACAGCCAGG
CTGCTCAGCTGTACCAAGAGAACAAGCGCGAGTATGAAAAACGTGTTTCTGCGATAGTAG
AACAGAGCTGGCGTGACTGTTGACCCGGGTGCAGGAAAAGAAGCAGCTGGTCATGAGAAA
ACTATATATTGATGTGTTTGTCACCTTCCTATTCTTCAGTGTCATTACATTTACTTTATT
AAAAGCAAAATAGCTGTTGTGCTGTTTCCATCTTCCCTTGCCAAGCTTTTCCTACCCTTT
CTACCCTCTCCTTAAACTTCAGAAAACACCCTCTGAGATCAAATGTACTGTACCTGGGTT
ACGTGCAAAAATTACTGATGCTTAATTCCTTTTCTGTTGTATCTCGTTTCCAGTTTTAGG
GCAGTATTGTATTACTGTACTTTACACTAAGCTTTTAAAATGAATTGTTTTACAAGTGGT
GCTTTTGCATAGCTTGATGACCAGAATGTTATTTTTAACAGAATGATTGCTGGTGTTTCA
TCCTGGCTGGTCCTTCATTTGTGCTGGATTTAACAGTGACATTTTGGAATACGGCCTATA
GAAAACAGGGAAATAAATCCATATAAACATCCATTTTGAAAGAGCAATGGCAGCTAAAAA
GGCTGTGATACTAAGATTTAACCGTCATGAATTACAAGATTTTTCCCCCCCACTGGTAGG
AAGGAGACTGTTAAAGGACTCAGTCAAAGGAATGCAGCAATTTAGTAACTGACACATCCT
CTCCTTGCAGGGTATTCACTGGAGACACCCATGCAAAGTTGCAGAATACTAAAGTCTTCT
GGATGTTCACTTTTTAAAGAGGTGTGGGAGCAGAGGAATGGAAACAATCATTAGTTTTTC
AGCTAGGGAAGGTTGGAGATCCTTTAATCTTTTTAAAGGAGCAGTGCTACCCTAGATAAA
CAAGTTTATAATCCCCCATTGTTTTTTAGAGTTTTAATTAACCCAAGGAAGGGAACATAT
CTGTGGCAAACTATTTTCCACTGAAATCCTCAGTTAATGCTGCATGCTTTAGTTTCTTCC
TCCCTTTCAGTATTGTAAGAACTTTGAAGTCAATGTTTGCAGTCTTTCTTTGGATATTTA
TACTTTTAGATAGTATCTTTAAGTAGCAGTGTGGGACAAGGCTTGTAAATGTTTTGTCTG
ATGTTCCATTGTCACCTTTTGTGCATTTATCACTCTTCTAAACCTAACTTTGCACAAGTA
ACCCATGTAAAAAATGTACATTTTTCAAAACTTGTAAATAAAAATAACCTTAAAAAAAAA
AAAAAAAAAAAA
|
|
gi|45382369|ref|NP_990196.1| |
Protein identifier
|
gi|45382369|ref|NP_990196.1| |
|
1-210, gnl|bosTau2|chrX (1025939-1026139) |
|
1-210, gnl|Hg17|chrX (118490393-118490602) |
|
1-210, gnl|Mm7|chrX (31634106-31634294) |
| |
|
466-616, gnl|bosTau2|chr7 (31293986-31293835) |
|
466-616, gnl|canFam2|chr32 (13309573-13309682) |
|
466-616, gnl|dasNov1|scaffold_152709 (14-97) |
|
466-616, gnl|echTel1|scaffold_92866 (1401-1290) |
|
466-616, gnl|galGal2|chr13 (14796553-14796442) |
|
466-616, gnl|hg17|chr4 (88114379-88114482) |
|
466-616, gnl|Hg17|chr5 (133753787-133753936) |
|
466-616, gnl|mm7|chr11 (51943563-51943452) |
|
466-616, gnl|Mm7|chr11 (51943600-51943446) |
|
466-616, gnl|monDom2|scaffold_6 (97743674-97743785) |
|
466-616, gnl|oryCun1|scaffold_202444 (26390-26501) |
|
466-616, gnl|panTro1|chr3 (104100307-104100410) |
|
466-616, gnl|rheMac2|chr5 (79793786-79793889) |
|
466-616, gnl|rn3|chr10 (37517412-37517301) |
|
466-616, gnl|tetNig1|chr7 (7987439-7987328) |
| |
|
1371-1786, gnl|bosTau2|chr26 (32543556-32543965) |
|
1371-1786, gnl|Hg17|chrX (118499836-118500254) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-210, gnl|bosTau2|chrX (1025939-1026139) |
|
1-210, gnl|Hg17|chrX (118490393-118490602) |
|
1-210, gnl|Mm7|chrX (31634106-31634294) |
| |
|
466-616, gnl|bosTau2|chr7 (31293986-31293835) |
|
466-616, gnl|canFam2|chr32 (13309573-13309682) |
|
466-616, gnl|dasNov1|scaffold_152709 (14-97) |
|
466-616, gnl|echTel1|scaffold_92866 (1401-1290) |
|
466-616, gnl|galGal2|chr13 (14796553-14796442) |
|
466-616, gnl|hg17|chr4 (88114379-88114482) |
|
466-616, gnl|Hg17|chr5 (133753787-133753936) |
|
466-616, gnl|mm7|chr11 (51943563-51943452) |
|
466-616, gnl|Mm7|chr11 (51943600-51943446) |
|
466-616, gnl|monDom2|scaffold_6 (97743674-97743785) |
|
466-616, gnl|oryCun1|scaffold_202444 (26390-26501) |
|
466-616, gnl|panTro1|chr3 (104100307-104100410) |
|
466-616, gnl|rheMac2|chr5 (79793786-79793889) |
|
466-616, gnl|rn3|chr10 (37517412-37517301) |
|
466-616, gnl|tetNig1|chr7 (7987439-7987328) |
| |
|
1371-1786, gnl|bosTau2|chr26 (32543556-32543965) |
|
1371-1786, gnl|Hg17|chrX (118499836-118500254) |
|
mgm (0.721371) |
|
rec (0.519211) |
|
cty (0.41632) |
|
pla (0.401016) |
|
nmm (0.398406) |
|
kid (0.389206) |
|
vin (0.332557) |
|
bfe (0.299715) |
|
cte (0.29274) |
|
fce (0.271592) |
|
ste (0.270416) |
|
col (0.195008) |
|
fty (0.17584) |
|
ill (0.175593) |
|
mcp (0.170648) |
|
cje (0.165235) |
|
tbr (0.154178) |
|
lun (0.150489) |
|
liv (0.146284) |
|
spl (0.143184) |
|
pty (0.142714) |
|
cov (0.132153) |
|
ova (0.129132) |
|
sug (0.127291) |
|
tra (0.123092) |
|
ecc (0.115035) |
|
cbl (0.114797) |
|
jca (0.11396) |
|
spc (0.113366) |
|
ldo (0.0970026) |
|
mgm (0.721371) |
|
rec (0.519211) |
|
cty (0.41632) |
|
pla (0.401016) |
|
nmm (0.398406) |
|
kid (0.389206) |
|
vin (0.332557) |
|
bfe (0.299715) |
|
cte (0.29274) |
|
fce (0.271592) |
|
ste (0.270416) |
|
col (0.195008) |
|
fty (0.17584) |
|
ill (0.175593) |
|
mcp (0.170648) |
|
cje (0.165235) |
|
tbr (0.154178) |
|
lun (0.150489) |
|
liv (0.146284) |
|
spl (0.143184) |
|
pty (0.142714) |
|
cov (0.132153) |
|
ova (0.129132) |
|
sug (0.127291) |
|
tra (0.123092) |
|
ecc (0.115035) |
|
cbl (0.114797) |
|
jca (0.11396) |
|
spc (0.113366) |
|
ldo (0.0970026) |
