Ss1.1-Pig4-TMW8056G03.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TATTTTCTTACTTGATGAAGAAGATAGATCAGTTTATTGTGGTAGCTTAAAATTTTTGAG ATGATTCCTGACTTTGAAATAACCCTTATAAGTACCTGTGACCATGAAAAGTGAAATTCA TTATATCTGAAAGAGGCCTAAATAGAAGAGAATTCAGGATTAGACTGGATGATTTTTACC AGGCCCCTTCCAGGTTTCATGTTCTATGATTGAAAAATATTTTTTCTAAAGTTATTTCAA CTCATGTTAATCTTTGCTGTGGGATTTTACTCCATATACCTTTAGGAATGTTTACATGGA ATGTTAACTTTCAAGGAATTCAGAATTGAATTACTGTAGTCATTTTACTTAGTTCAGGAA GTGGAATGTCATATCCCACATGTACAGATTCTATGTGGCAGAATAGACAGTAACATGTCT GCCAAACAATGAAACCAATAAAGATTTAAGGACAGAGTCTCTCTAAACTGTGTTCCTGTT ACTTCACTAGGGCGTATTAAACTGTTATTAGAAACCCAGTCATCACAGATTTCTCTAGGA ACCTGTACTAAATCTCCTTCTTTAAGTCAGAATAGTTATCTTTAAAGTTAGAATTTTCAA AAGGTTTGCATCCCTTAATCTATGTCATGCCATAGATTACAATATGTTTTTCTCCAAGGG ATAAGAAAACTGTTCTGGCAATACATTATCATCAATCCTTAAACAACAGTAACAGTCTTT TGGTGCTTAACTTAAAACCACCTATTACTGGTAATTTAAAAGATTCATTTTAGAATAACC TTTTTTTTAATTTTTATTAGAATATAGTTGACTTACAAAGTTGTGTTAGTTTCAGGTGTA CAGGAAAGTAAATCAGTTATATATGTCCATTTCTTCTCAGATTTTTTTTCCCATACATGT CATTACACAGTGCTGGGTAGATTTCTTTGTGTCACAGGACTTTAAGTAGTTGTTGCTGTT TTTACCTGCTATTTAGCACCTTCTCCATTGCTCCATTGGTATAAAAGATACTATTAAAGA ATTTCATTGAATGTTTGAAGTTTTACAAAAGGCAGCTTGCTTTCTAATCTATGCATCTTT GGGAATTTAAAAGAAATTTTATTCTTTGCTGTAAAGAGAAACTGCTGTAAGATTGGGATC TCTGCACCTGTGTACATATATATTTTGGCAATAAAGCAGCATGGGCTGAGAATGCACTGA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TATTTTCTTACTTGATGAAGAAGATAGATCAGTTTATTGTGGTAGCTTAAAATTTTTGAG ATGATTCCTGACTTTGAAATAACCCTTATAAGTACCTGTGACCATGAAAAGTGAAATTCA TTATATCTGAAAGAGGCCTAAATAGAAGAGAATTCAGGATTAGACTGGATGATTTTTACC AGGCCCCTTCCAGGTTTCATGTTCTATGATTGAAAAATATTTTTTCTAAAGTTATTTCAA CTCATGTTAATCTTTGCTGTGGGATTTTACTCCATATACCTTTAGGAATGTTTACATGGA ATGTTAACTTTCAAGGAATTCAGAATTGAATTACTGTAGTCATTTTACTTAGTTCAGGAA GTGGAATGTCATATCCCACATGTACAGATTCTATGTGGCAGAATAGACAGTAACATGTCT GCCAAACAATGAAACCAATAAAGATTTAAGGACAGAGTCTCTCTAAACTGTGTTCCTGTT ACTTCACTAGGGCGTATTAAACTGTTATTAGAAACCCAGTCATCACAGATTTCTCTAGGA ACCTGTACTAAATCTCCTTCTTTAAGTCAGAATAGTTATCTTTAAAGTTAGAATTTTCAA AAGGTTTGCATCCCTTAATCTATGTCATGCCATAGATTACAATATGTTTTTCTCCAAGGG ATAAGAAAACTGTTCTGGCAATACATTATCATCAATCCTTAAACAACAGTAACAGTCTTT TGGTGCTTAACTTAAAACCACCTATTACTGGTAATTTAAAAGATTCATTTTAGAATAACC TTTTTTTTAATTTTTATTAGAATATAGTTGACTTACAAAGTTGTGTTAGTTTCAGGTGTA CAGGAAAGTAAATCAGTTATATATGTCCATTTCTTCTCAGATTTTTTTTCCCATACATGT CATTACACAGTGCTGGGTAGATTTCTTTGTGTCACAGGACTTTAAGTAGTTGTTGCTGTT TTTACCTGCTATTTAGCACCTTCTCCATTGCTCCATTGGTATAAAAGATACTATTAAAGA ATTTCATTGAATGTTTGAAGTTTTACAAAAGGCAGCTTGCTTTCTAATCTATGCATCTTT GGGAATTTAAAAGAAATTTTATTCTTTGCTGTAAAGAGAAACTGCTGTAAGATTGGGATC TCTGCACCTGTGTACATATATATTTTGGCAATAAAGCAGCATGGGCTGAGAATGCACTGA AAAAAAAAAAAA |
| Aligned organism(s): 48 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
| 2-384, gnl|bosTau2|chr10 (26088161-26088534) | |
| 2-384, gnl|Hg17|chr15 (39384679-39385357) | |
| 452-782, gnl|bosTau2|chr10 (26088686-26089000) | |
| 452-782, gnl|canFam2|chr30 (11368740-11369587) | |
| 452-782, gnl|dasNov1|scaffold_13889 (41755-40960) | |
| 452-782, gnl|echTel1|scaffold_300083 (14123-13345) | |
| 452-782, gnl|Hg17|chr15 (39385413-39385734) | |
| 452-782, gnl|hg17|chrX (115916924-115917736) | |
| 452-782, gnl|loxAfr1|scaffold_1040 (11933-11080) | |
| 452-782, gnl|Mm7|chr2 (119347739-119348097) | |
| 452-782, gnl|monDom2|scaffold_53 (7351-8350) | |
| 452-782, gnl|oryCun1|scaffold_161921 (22525-21759) | |
| 452-782, gnl|panTro1|chrX (119870840-119871650) | |
| 452-782, gnl|rheMac2|chr7 (19692896-19693692) | |
| 957-1202, gnl|bosTau2|chr10 (26089024-26089263) | |
| 957-1202, gnl|canFam2|chr30 (11369138-11369580) | |
| 957-1202, gnl|canFam2|chr30 (11369572-11369139) | |
| 957-1202, gnl|canFam2|chr30 (11368740-11369587) | |
| 957-1202, gnl|dasNov1|scaffold_13889 (41345-40967) | |
| 957-1202, gnl|dasNov1|scaffold_13889 (40960-41344) | |
| 957-1202, gnl|dasNov1|scaffold_13889 (41755-40960) | |
| 957-1202, gnl|echTel1|scaffold_300083 (13745-13352) | |
| 957-1202, gnl|echTel1|scaffold_300083 (13345-13733) | |
| 957-1202, gnl|echTel1|scaffold_300083 (14123-13345) | |
| 957-1202, gnl|galGal2|chr5 (21830382-21830824) | |
| 957-1202, gnl|hg17|chr11 (125171471-125171879) | |
| 957-1202, gnl|hg17|chr15 (39385621-39386018) | |
| 957-1202, gnl|Hg17|chr15 (39385759-39386024) | |
| 957-1202, gnl|hg17|chrX (115916924-115917736) | |
| 957-1202, gnl|loxAfr1|scaffold_1040 (11506-11087) | |
| 957-1202, gnl|loxAfr1|scaffold_1040 (11080-11505) | |
| 957-1202, gnl|loxAfr1|scaffold_1040 (11933-11080) | |
| 957-1202, gnl|mm7|chr10 (43187479-43187824) | |
| 957-1202, gnl|mm7|chr2 (119347973-119348340) | |
| 957-1202, gnl|Mm7|chr2 (119348118-119348346) | |
| 957-1202, gnl|monDom2|scaffold_12 (792975-792583) | |
| 957-1202, gnl|monDom2|scaffold_53 (8354-7872) | |
| 957-1202, gnl|monDom2|scaffold_53 (7351-8350) | |
| 957-1202, gnl|oryCun1|scaffold_161921 (22133-21766) | |
| 957-1202, gnl|oryCun1|scaffold_161921 (21759-22126) | |
| 957-1202, gnl|oryCun1|scaffold_161921 (22525-21759) | |
| 957-1202, gnl|panTro1|chr16 (39329938-39330335) | |
| 957-1202, gnl|panTro1|chr9_random (6908662-6909070) | |
| 957-1202, gnl|panTro1|chrX (119870840-119871650) | |
| 957-1202, gnl|rheMac2|chr14 (123951814-123952220) | |
| 957-1202, gnl|rheMac2|chr7 (19693289-19693685) | |
| 957-1202, gnl|rheMac2|chr7 (19692896-19693692) | |
| 957-1202, gnl|rn3|chr3 (106018318-106018694) |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-384, gnl|bosTau2|chr10 (26088161-26088534) | |
| 2-384, gnl|Hg17|chr15 (39384679-39385357) | |
| 452-782, gnl|bosTau2|chr10 (26088686-26089000) | |
| 452-782, gnl|canFam2|chr30 (11368740-11369587) | |
| 452-782, gnl|dasNov1|scaffold_13889 (41755-40960) | |
| 452-782, gnl|echTel1|scaffold_300083 (14123-13345) | |
| 452-782, gnl|Hg17|chr15 (39385413-39385734) | |
| 452-782, gnl|hg17|chrX (115916924-115917736) | |
| 452-782, gnl|loxAfr1|scaffold_1040 (11933-11080) | |
| 452-782, gnl|Mm7|chr2 (119347739-119348097) | |
| 452-782, gnl|monDom2|scaffold_53 (7351-8350) | |
| 452-782, gnl|oryCun1|scaffold_161921 (22525-21759) | |
| 452-782, gnl|panTro1|chrX (119870840-119871650) | |
| 452-782, gnl|rheMac2|chr7 (19692896-19693692) | |
| 957-1202, gnl|bosTau2|chr10 (26089024-26089263) | |
| 957-1202, gnl|canFam2|chr30 (11369138-11369580) | |
| 957-1202, gnl|canFam2|chr30 (11369572-11369139) | |
| 957-1202, gnl|canFam2|chr30 (11368740-11369587) | |
| 957-1202, gnl|dasNov1|scaffold_13889 (41345-40967) | |
| 957-1202, gnl|dasNov1|scaffold_13889 (40960-41344) | |
| 957-1202, gnl|dasNov1|scaffold_13889 (41755-40960) | |
| 957-1202, gnl|echTel1|scaffold_300083 (13745-13352) | |
| 957-1202, gnl|echTel1|scaffold_300083 (13345-13733) | |
| 957-1202, gnl|echTel1|scaffold_300083 (14123-13345) | |
| 957-1202, gnl|galGal2|chr5 (21830382-21830824) | |
| 957-1202, gnl|hg17|chr11 (125171471-125171879) | |
| 957-1202, gnl|hg17|chr15 (39385621-39386018) | |
| 957-1202, gnl|Hg17|chr15 (39385759-39386024) | |
| 957-1202, gnl|hg17|chrX (115916924-115917736) | |
| 957-1202, gnl|loxAfr1|scaffold_1040 (11506-11087) | |
| 957-1202, gnl|loxAfr1|scaffold_1040 (11080-11505) | |
| 957-1202, gnl|loxAfr1|scaffold_1040 (11933-11080) | |
| 957-1202, gnl|mm7|chr10 (43187479-43187824) | |
| 957-1202, gnl|mm7|chr2 (119347973-119348340) | |
| 957-1202, gnl|Mm7|chr2 (119348118-119348346) | |
| 957-1202, gnl|monDom2|scaffold_12 (792975-792583) | |
| 957-1202, gnl|monDom2|scaffold_53 (8354-7872) | |
| 957-1202, gnl|monDom2|scaffold_53 (7351-8350) | |
| 957-1202, gnl|oryCun1|scaffold_161921 (22133-21766) | |
| 957-1202, gnl|oryCun1|scaffold_161921 (21759-22126) | |
| 957-1202, gnl|oryCun1|scaffold_161921 (22525-21759) | |
| 957-1202, gnl|panTro1|chr16 (39329938-39330335) | |
| 957-1202, gnl|panTro1|chr9_random (6908662-6909070) | |
| 957-1202, gnl|panTro1|chrX (119870840-119871650) | |
| 957-1202, gnl|rheMac2|chr14 (123951814-123952220) | |
| 957-1202, gnl|rheMac2|chr7 (19693289-19693685) | |
| 957-1202, gnl|rheMac2|chr7 (19692896-19693692) | |
| 957-1202, gnl|rn3|chr3 (106018318-106018694) |
| Expressed library(ies): 29 entry(ies) | More info |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
| fco (1.57208) | |
| cbe (0.717703) | |
| ste (0.676041) | |
| isp (0.601504) | |
| liv (0.585137) | |
| tbr (0.462535) | |
| bfe (0.449573) | |
| amn (0.417711) | |
| ldo (0.38801) | |
| fbs (0.350693) | |
| rec (0.346141) | |
| fce (0.271592) | |
| mgp (0.230681) | |
| ece (0.229305) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| fat (0.147427) | |
| lin (0.145603) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| ret (0.128733) | |
| thg (0.126791) | |
| spc (0.113366) | |
| cty (0.10408) |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fco (1.57208) | |
| cbe (0.717703) | |
| ste (0.676041) | |
| isp (0.601504) | |
| liv (0.585137) | |
| tbr (0.462535) | |
| bfe (0.449573) | |
| amn (0.417711) | |
| ldo (0.38801) | |
| fbs (0.350693) | |
| rec (0.346141) | |
| fce (0.271592) | |
| mgp (0.230681) | |
| ece (0.229305) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| fat (0.147427) | |
| lin (0.145603) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| ret (0.128733) | |
| thg (0.126791) | |
| spc (0.113366) | |
| cty (0.10408) |