Non-Coding RNA Search

Ss1.1-Pig4-TMW8056G06.5

Sequence:


               
               CCCAAAAATCTTTATTTTAAAAAATATTTCATATCCACGCAGTTTGATGTTCTCAAACAT
GGCCTTCTTGATAATCTGGGCATTTCTCAAGGAGCGTACCCCCACTTTCTTCATCATGAC
TGTCAGTGTTAGTACCACATTTTTGGGCTAGCTAGGGCAGATGGAAGCCAGGGAGCCCTA
AGAGCCAGGTGGGCTCATCCTGTCACTGTCTTTATCACATTCAGGCTTGCAGGCTACTCC
CTGGCTGCCCTCATACCCACCTCATGCCTTGCTGGGCCTCCGCCTGCCCCCTAAAATGCC
CACTTTATGCCCATTCATGAACCAGGAGCCAAAACAAGTGTCTCTATTTTCTTTTTAAAC
CCAGCTTTTGGAAGCAATATAAAACTCCCACACCCACCCAGAACCCCAGAACTCCCCACC
CAAGAGAAAAGGAGATTTGGGGTCCTGGTCCCACATTCTTTGATGCTGCAGAGTAGGCAC
GGGGACAGAGGGGTGGGGTTAGGGATTTCTCTTATCCCTGAGAAGGCAGAGGCACTGGCT
AGCCTACCCTTCCCCAGGCTTGGATACCTCAGGCCCTCCCCTTGCTTCTGCACCTTCAGC
AAACTCAGTAGGAAGAAAAAAAACCCTAAAAATAAAAACAGTCCTCCTCCTCTCAGGTGG
CCCTTCCTACCCCTACCTAGATAGGGAGAGGATTCAAGTATTGCTGCTGATGAGAGTTGG
GCAAGGACCACAAGAGCTGGCATGGAGGGGCCCTGCCCATTCCTGCCTCCCTACCAGGAG
GGGAGGGCTGGATCAAGAAATGGGTGAATAAAACGAATTGATAATAAATAAAATTAACAA
GTAAATTAATAAATACTAATGAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAAAAATCTTTATTTTAAAAAATATTTCATATCCACGCAGTTTGATGTTCTCAAACAT
GGCCTTCTTGATAATCTGGGCATTTCTCAAGGAGCGTACCCCCACTTTCTTCATCATGAC
TGTCAGTGTTAGTACCACATTTTTGGGCTAGCTAGGGCAGATGGAAGCCAGGGAGCCCTA
AGAGCCAGGTGGGCTCATCCTGTCACTGTCTTTATCACATTCAGGCTTGCAGGCTACTCC
CTGGCTGCCCTCATACCCACCTCATGCCTTGCTGGGCCTCCGCCTGCCCCCTAAAATGCC
CACTTTATGCCCATTCATGAACCAGGAGCCAAAACAAGTGTCTCTATTTTCTTTTTAAAC
CCAGCTTTTGGAAGCAATATAAAACTCCCACACCCACCCAGAACCCCAGAACTCCCCACC
CAAGAGAAAAGGAGATTTGGGGTCCTGGTCCCACATTCTTTGATGCTGCAGAGTAGGCAC
GGGGACAGAGGGGTGGGGTTAGGGATTTCTCTTATCCCTGAGAAGGCAGAGGCACTGGCT
AGCCTACCCTTCCCCAGGCTTGGATACCTCAGGCCCTCCCCTTGCTTCTGCACCTTCAGC
AAACTCAGTAGGAAGAAAAAAAACCCTAAAAATAAAAACAGTCCTCCTCCTCTCAGGTGG
CCCTTCCTACCCCTACCTAGATAGGGAGAGGATTCAAGTATTGCTGCTGATGAGAGTTGG
GCAAGGACCACAAGAGCTGGCATGGAGGGGCCCTGCCCATTCCTGCCTCCCTACCAGGAG
GGGAGGGCTGGATCAAGAAATGGGTGAATAAAACGAATTGATAATAAATAAAATTAACAA
GTAAATTAATAAATACTAATGAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               339-528, - strand, RNAz p=0.994119

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               339-528, - strand, RNAz p=0.994119

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_020897, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_020897, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               150-864, gnl|bosTau2|chr3 (13404917-13405655)
               

               
               150-864, gnl|Hg17|chr1 (152072926-152072160)
               

               
               150-864, gnl|Mm7|chr3 (89272419-89273222)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               150-864, gnl|bosTau2|chr3 (13404917-13405655)
               

               
               150-864, gnl|Hg17|chr1 (152072926-152072160)
               

               
               150-864, gnl|Mm7|chr3 (89272419-89273222)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cli (0.152812)
               

               
               eli (0.151814)
               

               
               hyp (0.142837)
               

               
               eje (0.0988338)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               hyp (0.142837)
               

               
               eje (0.0988338)

	150-864, gnl\|bosTau2\|chr3 (13404917-13405655)
	150-864, gnl\|Hg17\|chr1 (152072926-152072160)
	150-864, gnl\|Mm7\|chr3 (89272419-89273222)