Non-Coding RNA Search

Ss1.1-Pig4-TMW8056G17.5

Sequence:


               
               GGAGTAACTGATAGTCTTTCCACCTGACGGTGGAGGGAACAGACTCGGGGGGGCCAGTGA
CAGCGGAGGTCAGACCGTTCAGAAGAGGCTCCGTCAGGATGAGTTCAGCCGGTAGCGGAT
ACATGGCGTTGTGATCAGTGTGGTGTAGTGATGGAACGCCGCTGAGAGGTCTGACAAGAT
GTACCAGGTCCCACTGCCGCTGGACCGGGATGGGACCCTGGTCCGGCTTCGCTTCACCCT
GGTGGCCGTGGTCATGGTCTGCTGTCCACTTATCGCCTTCTTCTTCTGCATCCTCTGGTC
CCTGCTCTTCCACTTCAAGGAGACTACGGCCACACACTGCGGGGTGCCCAATTACCTGCC
CTCCGTGAGCTCGGCCATAGGCGGGGAGGTGCCCCAGCGCTACGTGTGGCGCTTCTGCAT
CGGTCTGCACTCGGCGCCCCGCTTCCTGGTGGCCTTCGCCTACTGGAACTACTACCTCAG
CTGTGCCTTCCCGGGTCCCTGCTACCGCCAGCTTTGCCGCCTCAACTTCGGCCTCAACGT
CGTGGAGAACCTGGCGCTGCTCGTGCTCACCTACGTCTCCTCTTCCGAGGACTTCACCAT
CCATGAAAACGCCTTCATTGTGTTCATCGCCTCATCTCTCAGTCACATGCTGCTCACCTG
CATCCTCTGGCGCCTGACCAAGAAGCACACAGACCGCAAGTCCTACAACTGGAAACAGCG
GCTCTTCATCATCAACTTCGTCTCCTTCTTCACGGCGCTGGCTGTCTACTTTCGGCACAA
TATGTACTGTGAGGCTGGAGTGTATACCATCTTTGCCATCTTGGAGTACACTGTTGTCCT
GACCAACATGGCATTCCACATGACGGCCTGGTGGGACTTTGGAAACAAGGAGCTGCTCAT
CGCCTCTCAGCCTGAGGAAAAACGGTTCTAAACCCTTCTCTCCTGCTGGGCGAGAGGCCC
ACTGCCCCGACACCAGGAACAAGATACCACTCTGGCCGTCCTCTACCCCCTGTGTCCTCT
CGGGGCCCTCCTGAAGCTGGGCAGAGGGGAAGGGCGGGCGGGCACAGGACACGGCTTTAC
CCGGCCCTGCTGGGGTCTCCTCTCCCCCGCCCACTGGAAGGCACCAGGGCCTTCAGACAG
CACCACCTGTACTTGGGAAGCCCTGAGAAGCCGAGTTGGCAGGAGAGCTTCACCGTCTGG
TGCTAAAAAAGTCCTGAGGTTCTAACCACCATCCGGTTCTTGGCCTTTACAGAGCCACCT
CGCGCTGAGGTCAGGGACCACTGAGCAGCGGCTGCTACCAGAAAACCACAGCCATCTCGC
CCCGTGAGGTCATTCACTTGACTAATGTGTCTAAGAATTTCCTCTGCACAGTCAGGCCCA
CGGCCACGGTCCCGCTAAGGCTGCCCAGGTGTCCTAGGCCTGACCTCACCTCTGACTGGT
GTGCGCCCTTCTCTGTCTGGGCCTCCGCGTGTCCGTGTGGATGGTGGCGGGTGGGGGATC
TATGATTTCCAAGGGCTCTGCCAGCCTGTGCGTCTCCCGGTGGAGGTGGGGGGGTTCTGC
CTTCTGCCCCCCAGGGATAAGATCCAGAAAAAACACTGGCACAGCTCGTCTTTCCCTCCC
CTTCCGAAATCTCTGGCTTACAGACGCTTCCTCCTTGGCACAGGTGTCAGGTAGAGGGGT
CAGAGGCACAGGTTCCCACCCAGAACGGGCTCTCTGGTGTCCCCCCACCCCATCCCATCC
TCCCCACTGCCTCAGGCCCTCTGCTCTTGGGGTTGTACATTTTATTTCAAAGGAAAATAA
ATTTTTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGTAACTGATAGTCTTTCCACCTGACGGTGGAGGGAACAGACTCGGGGGGGCCAGTGA
CAGCGGAGGTCAGACCGTTCAGAAGAGGCTCCGTCAGGATGAGTTCAGCCGGTAGCGGAT
ACATGGCGTTGTGATCAGTGTGGTGTAGTGATGGAACGCCGCTGAGAGGTCTGACAAGAT
GTACCAGGTCCCACTGCCGCTGGACCGGGATGGGACCCTGGTCCGGCTTCGCTTCACCCT
GGTGGCCGTGGTCATGGTCTGCTGTCCACTTATCGCCTTCTTCTTCTGCATCCTCTGGTC
CCTGCTCTTCCACTTCAAGGAGACTACGGCCACACACTGCGGGGTGCCCAATTACCTGCC
CTCCGTGAGCTCGGCCATAGGCGGGGAGGTGCCCCAGCGCTACGTGTGGCGCTTCTGCAT
CGGTCTGCACTCGGCGCCCCGCTTCCTGGTGGCCTTCGCCTACTGGAACTACTACCTCAG
CTGTGCCTTCCCGGGTCCCTGCTACCGCCAGCTTTGCCGCCTCAACTTCGGCCTCAACGT
CGTGGAGAACCTGGCGCTGCTCGTGCTCACCTACGTCTCCTCTTCCGAGGACTTCACCAT
CCATGAAAACGCCTTCATTGTGTTCATCGCCTCATCTCTCAGTCACATGCTGCTCACCTG
CATCCTCTGGCGCCTGACCAAGAAGCACACAGACCGCAAGTCCTACAACTGGAAACAGCG
GCTCTTCATCATCAACTTCGTCTCCTTCTTCACGGCGCTGGCTGTCTACTTTCGGCACAA
TATGTACTGTGAGGCTGGAGTGTATACCATCTTTGCCATCTTGGAGTACACTGTTGTCCT
GACCAACATGGCATTCCACATGACGGCCTGGTGGGACTTTGGAAACAAGGAGCTGCTCAT
CGCCTCTCAGCCTGAGGAAAAACGGTTCTAAACCCTTCTCTCCTGCTGGGCGAGAGGCCC
ACTGCCCCGACACCAGGAACAAGATACCACTCTGGCCGTCCTCTACCCCCTGTGTCCTCT
CGGGGCCCTCCTGAAGCTGGGCAGAGGGGAAGGGCGGGCGGGCACAGGACACGGCTTTAC
CCGGCCCTGCTGGGGTCTCCTCTCCCCCGCCCACTGGAAGGCACCAGGGCCTTCAGACAG
CACCACCTGTACTTGGGAAGCCCTGAGAAGCCGAGTTGGCAGGAGAGCTTCACCGTCTGG
TGCTAAAAAAGTCCTGAGGTTCTAACCACCATCCGGTTCTTGGCCTTTACAGAGCCACCT
CGCGCTGAGGTCAGGGACCACTGAGCAGCGGCTGCTACCAGAAAACCACAGCCATCTCGC
CCCGTGAGGTCATTCACTTGACTAATGTGTCTAAGAATTTCCTCTGCACAGTCAGGCCCA
CGGCCACGGTCCCGCTAAGGCTGCCCAGGTGTCCTAGGCCTGACCTCACCTCTGACTGGT
GTGCGCCCTTCTCTGTCTGGGCCTCCGCGTGTCCGTGTGGATGGTGGCGGGTGGGGGATC
TATGATTTCCAAGGGCTCTGCCAGCCTGTGCGTCTCCCGGTGGAGGTGGGGGGGTTCTGC
CTTCTGCCCCCCAGGGATAAGATCCAGAAAAAACACTGGCACAGCTCGTCTTTCCCTCCC
CTTCCGAAATCTCTGGCTTACAGACGCTTCCTCCTTGGCACAGGTGTCAGGTAGAGGGGT
CAGAGGCACAGGTTCCCACCCAGAACGGGCTCTCTGGTGTCCCCCCACCCCATCCCATCC
TCCCCACTGCCTCAGGCCCTCTGCTCTTGGGGTTGTACATTTTATTTCAAAGGAAAATAA
ATTTTTTTTTTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|14602865|gb|AAH09930.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|14602865|gb|AAH09930.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               995-1110, - strand, RNAz p=0.87862
               

               
               1190-1341, + strand, RNAz p=0.992372

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               995-1110, - strand, RNAz p=0.87862
               

               
               1190-1341, + strand, RNAz p=0.992372

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_014489, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_014489, +

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               343-596, gnl|bosTau2|chr15 (32922751-32923004)
               

               
               343-596, gnl|Hg17|chr11 (3801688-3801941)
               

               
               343-596, gnl|Mm7|chr7 (98282192-98282445)
               


               
               799-1809, gnl|bosTau2|chr15 (32924186-32925197)
               

               
               799-1809, gnl|Hg17|chr11 (3803132-3804149)
               

               
               799-1809, gnl|Mm7|chr7 (98283498-98284656)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               343-596, gnl|bosTau2|chr15 (32922751-32923004)
               

               
               343-596, gnl|Hg17|chr11 (3801688-3801941)
               

               
               343-596, gnl|Mm7|chr7 (98282192-98282445)
               


               
               799-1809, gnl|bosTau2|chr15 (32924186-32925197)
               

               
               799-1809, gnl|Hg17|chr11 (3803132-3804149)
               

               
               799-1809, gnl|Mm7|chr7 (98283498-98284656)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

Help | Less info


               
               nco (0.485201)
               

               
               nep (0.36785)
               

               
               eru (0.240096)
               

               
               eje (0.197668)
               

               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               eep (0.122564)
               

               
               med (0.116252)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.485201)
               

               
               nep (0.36785)
               

               
               eru (0.240096)
               

               
               eje (0.197668)
               

               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               eep (0.122564)
               

               
               med (0.116252)

	995-1110, - strand, RNAz p=0.87862
	1190-1341, + strand, RNAz p=0.992372

	343-596, gnl\|bosTau2\|chr15 (32922751-32923004)
	343-596, gnl\|Hg17\|chr11 (3801688-3801941)
	343-596, gnl\|Mm7\|chr7 (98282192-98282445)

	799-1809, gnl\|bosTau2\|chr15 (32924186-32925197)
	799-1809, gnl\|Hg17\|chr11 (3803132-3804149)
	799-1809, gnl\|Mm7\|chr7 (98283498-98284656)

	nco (0.485201)
	nep (0.36785)
	eru (0.240096)
	eje (0.197668)
	nlu (0.191681)
	mcp (0.170648)
	cli (0.152812)
	hyp (0.142837)
	pty (0.142714)
	ute (0.132784)
	ova (0.129132)
	eep (0.122564)
	med (0.116252)