Non-Coding RNA Search

Ss1.1-Pig4-TMW8056G19.3

Sequence:


               
               ATCCGTCACCCGTATGAAACACAGTCTGACAGCTTCTACTTCGTGGATGACCGGCTGGTG
ATGCACAACAAAGCAGACTATTCCTACAGCGGGACGCCCTGACCCCAAACCGCCCCTACC
CCAGGAGGGTCCTGGGCCCCAGCTGTGCCCACCCCGATACTCACCTCTCCACCCCAGGTC
TTCTGCCTGGGGAGTGTTTCAGGAGCCCTGGACCCTGAGTCAGTGTTGGGAGGGAGGGTG
CCTGATGTCCCCAGTTCAAGTCCGTGAAGCCCAGGGGGCCTGGCACGTGGGGTGGGTGTA
GGGGGGCTATTTGCCTCCGTGTCCAGCAAGGCCTCCCGTGGGAAGTGGAGTAGCCACGAC
TTCCGGTCAGCCTAGCTGGGCCTCTTGGGCCCAAGTTTCAGAATAGTGTTCCCCTATCCA
GGCTTTGACTAGGTCGGGCAGGAGCCCATGCCCTGTCCCCTGCCCACCACCGACAGGCCA
TTTAGAGTTGTAAGGTCACAGACAAAGATCCATGTGGGGTCTGGCAGCCAAGCTTCCCAA
GGGAGTTGGGGCCTTGACCCCAGCCCCGCCTCCACCATCAGGGGCTGAGACACTGCCCGA
GGTGTGGGAGGGATGCGCCAGAGGGCAGCCCGTGGGAGGGACTGGACCAACTGTATATAG
TTTTCAATAAACTCTTTCTCCTTTGCTGCTCTCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCCGTCACCCGTATGAAACACAGTCTGACAGCTTCTACTTCGTGGATGACCGGCTGGTG
ATGCACAACAAAGCAGACTATTCCTACAGCGGGACGCCCTGACCCCAAACCGCCCCTACC
CCAGGAGGGTCCTGGGCCCCAGCTGTGCCCACCCCGATACTCACCTCTCCACCCCAGGTC
TTCTGCCTGGGGAGTGTTTCAGGAGCCCTGGACCCTGAGTCAGTGTTGGGAGGGAGGGTG
CCTGATGTCCCCAGTTCAAGTCCGTGAAGCCCAGGGGGCCTGGCACGTGGGGTGGGTGTA
GGGGGGCTATTTGCCTCCGTGTCCAGCAAGGCCTCCCGTGGGAAGTGGAGTAGCCACGAC
TTCCGGTCAGCCTAGCTGGGCCTCTTGGGCCCAAGTTTCAGAATAGTGTTCCCCTATCCA
GGCTTTGACTAGGTCGGGCAGGAGCCCATGCCCTGTCCCCTGCCCACCACCGACAGGCCA
TTTAGAGTTGTAAGGTCACAGACAAAGATCCATGTGGGGTCTGGCAGCCAAGCTTCCCAA
GGGAGTTGGGGCCTTGACCCCAGCCCCGCCTCCACCATCAGGGGCTGAGACACTGCCCGA
GGTGTGGGAGGGATGCGCCAGAGGGCAGCCCGTGGGAGGGACTGGACCAACTGTATATAG
TTTTCAATAAACTCTTTCTCCTTTGCTGCTCTCTGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               231-346, + strand, RNAz p=0.688427

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               231-346, + strand, RNAz p=0.688427

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               272-361, + strand, RNAmicro p=0.975446

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               272-361, + strand, RNAmicro p=0.975446

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_054035, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_054035, +

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-426, gnl|bosTau2|chr19 (13552015-13551587)
               

               
               1-426, gnl|Hg17|chr17 (23898543-23898085)
               

               
               1-426, gnl|Mm7|chr11 (78430117-78430529)
               


               
               456-696, gnl|bosTau2|chr19 (13551586-13551348)
               

               
               456-696, gnl|canFam2|chr9 (46079878-46080256)
               

               
               456-696, gnl|dasNov1|scaffold_60322 (2519-2206)
               

               
               456-696, gnl|echTel1|scaffold_313991 (85955-85638)
               

               
               456-696, gnl|hg17|chr17 (23897818-23898173)
               

               
               456-696, gnl|Hg17|chr17 (23898084-23897847)
               

               
               456-696, gnl|loxAfr1|scaffold_5483 (959-1275)
               

               
               456-696, gnl|mm7|chr11 (78430762-78430448)
               

               
               456-696, gnl|Mm7|chr11 (78430530-78430730)
               

               
               456-696, gnl|oryCun1|scaffold_173989 (2459-2171)
               

               
               456-696, gnl|panTro1|chr19_random (12710399-12710754)
               

               
               456-696, gnl|rheMac2|chr16 (23741420-23741773)
               

               
               456-696, gnl|rn3|chr10 (64299581-64299889)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-426, gnl|bosTau2|chr19 (13552015-13551587)
               

               
               1-426, gnl|Hg17|chr17 (23898543-23898085)
               

               
               1-426, gnl|Mm7|chr11 (78430117-78430529)
               


               
               456-696, gnl|bosTau2|chr19 (13551586-13551348)
               

               
               456-696, gnl|canFam2|chr9 (46079878-46080256)
               

               
               456-696, gnl|dasNov1|scaffold_60322 (2519-2206)
               

               
               456-696, gnl|echTel1|scaffold_313991 (85955-85638)
               

               
               456-696, gnl|hg17|chr17 (23897818-23898173)
               

               
               456-696, gnl|Hg17|chr17 (23898084-23897847)
               

               
               456-696, gnl|loxAfr1|scaffold_5483 (959-1275)
               

               
               456-696, gnl|mm7|chr11 (78430762-78430448)
               

               
               456-696, gnl|Mm7|chr11 (78430530-78430730)
               

               
               456-696, gnl|oryCun1|scaffold_173989 (2459-2171)
               

               
               456-696, gnl|panTro1|chr19_random (12710399-12710754)
               

               
               456-696, gnl|rheMac2|chr16 (23741420-23741773)
               

               
               456-696, gnl|rn3|chr10 (64299581-64299889)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               cag (0.453583)
               

               
               lnt (0.284616)
               

               
               ece (0.229305)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.453583)
               

               
               lnt (0.284616)
               

               
               ece (0.229305)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)

	1-426, gnl\|bosTau2\|chr19 (13552015-13551587)
	1-426, gnl\|Hg17\|chr17 (23898543-23898085)
	1-426, gnl\|Mm7\|chr11 (78430117-78430529)

	456-696, gnl\|bosTau2\|chr19 (13551586-13551348)
	456-696, gnl\|canFam2\|chr9 (46079878-46080256)
	456-696, gnl\|dasNov1\|scaffold_60322 (2519-2206)
	456-696, gnl\|echTel1\|scaffold_313991 (85955-85638)
	456-696, gnl\|hg17\|chr17 (23897818-23898173)
	456-696, gnl\|Hg17\|chr17 (23898084-23897847)
	456-696, gnl\|loxAfr1\|scaffold_5483 (959-1275)
	456-696, gnl\|mm7\|chr11 (78430762-78430448)
	456-696, gnl\|Mm7\|chr11 (78430530-78430730)
	456-696, gnl\|oryCun1\|scaffold_173989 (2459-2171)
	456-696, gnl\|panTro1\|chr19_random (12710399-12710754)
	456-696, gnl\|rheMac2\|chr16 (23741420-23741773)
	456-696, gnl\|rn3\|chr10 (64299581-64299889)

	cag (0.453583)
	lnt (0.284616)
	ece (0.229305)
	nep (0.183925)
	ill (0.175593)
	fbs (0.175346)
	mcp (0.170648)
	nje (0.16592)
	cly (0.120642)
	pgl (0.118483)