Non-Coding RNA Search

Ss1.1-Pig4-TMW8056G20.5

Sequence:


               
               GGAAGAAATGACATAGTAATTCTTAGTAAACATGCTTATCTTTGTATAAAGTCTCTTAGA
GCTTCCACAAAATAAAGTAGTATAATCATGCAAAGCCATTTCTTTGTGACGGAAAATACT
TCTTTACAACAATTCTTCATGTTTTCCTCCAGGCCAGAAAGACCTCCTGACGCCATGTTA
TAGAAAACAAGTTCTCTCTGGGACTTTTGGACCTATTAACCCTATTTTGAATACAACTTA
TAACTTCCTGTCTAAATTTTTCAAAGAAATTAGTACCGTGTTTCCAGATGAATTCATTCA
TATTGGAGGAGATGAAGTAGACTTTGATTGTTGGTACGACCACTTGTTAAAACTTTTTTG
AACTGTGGCACACGAAGTAAGGTAGAGAGGTCTCCACGTGAAAGGGGAAGATGAGGGGGT
AACATCTGTAAGGTTTTAACTTGGCAGCACAACTCCTGAGATGGTGAATTTTTGCAGAAT
GTACATACGGGTTACGTGACAAGGTAAAAGATTTTAGGAAGGAGAATTAAGATGAAGAAA
AAAACGGGAGAGTTAAAAAAAGGCTACATATAAAATTGTTTTGCAGTGGAAAACTAAGAT
ATCTCAAGTTTTTAAGCTTACTTTACTCTCTACAAACCTAATAGTTTAAAATCTGTACAG
ATAATGTGAGGGGTATATGTTGCTTTAAGAATACTGGGCATATTAAACTTTTACTGAAAT
TTTCATCACTATTTTTGTTTAAGGGCATCCAATTCAGAAATCCTGCAGTTCATGCAGGAA
AAAGGCTTTAGCAAAAATTTCACTAAACTCCAATCTTTCTACGTGTTCAAGTAAGTTACT
TAAAAGCTTCCTTCTGTTTTTATTTCATCAGTGCCTTTTGTAGGAGTTTGAGCTGTTACT
TAGTACTATTTTAATTTCTCATTTTCTCTTTACCCACTGCCAAAGTAAAGGTGTTACACT
CTTTGTCATACATAGATGAAAAATCATAAAGGAGGGAGCAGTAGCCACTCTTTTCTTTAA
ATCAGTAACACGGTGACTCGGATCCTTTTGCAGTAACTGTTGAAACATAGGACAGCAGTC
ATCTTTTACAAGAACGCAAAACCCTGACTTTAAGCCTGCAATTCTTCGTCACCATCCAGC
CCCTAGAACACATTCACTTGTCAACTCCAGCAGCTTCTCTTTTACTTTATACATATCCTG
TCTGGTACAGGAGCCACAGCCACTGTTCCTATTTCAATTAAAGAAAATTAAAAATTCAGT
TCCTTAGTCCATATGCCACATTTCAAGTGTTCAGTTAACATCCCCATGAGGCTAGTGGCT
CCCATGTCAGAATGTACAGAAGGACATTTCCATCACTGCAGAAAGTTACACTGGGCAGTG
CTACTCTATACTAGGAAGCAGTAAACTCATCCTGTAAAGGGCCAGACAGTGGGAGTTCCC
AGTGTGGTTAAGAACCCAACTTAGTGAACGTGAGGGTGTAAGTCTGATCACAGGCCTCGT
TCAGTGGATTAAGGTTGCAAATGCAGCTCAGATCCTGTGTTGTTGTTGGTGTAGGCCAGC
AGCTCTGATTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGAAATGACATAGTAATTCTTAGTAAACATGCTTATCTTTGTATAAAGTCTCTTAGA
GCTTCCACAAAATAAAGTAGTATAATCATGCAAAGCCATTTCTTTGTGACGGAAAATACT
TCTTTACAACAATTCTTCATGTTTTCCTCCAGGCCAGAAAGACCTCCTGACGCCATGTTA
TAGAAAACAAGTTCTCTCTGGGACTTTTGGACCTATTAACCCTATTTTGAATACAACTTA
TAACTTCCTGTCTAAATTTTTCAAAGAAATTAGTACCGTGTTTCCAGATGAATTCATTCA
TATTGGAGGAGATGAAGTAGACTTTGATTGTTGGTACGACCACTTGTTAAAACTTTTTTG
AACTGTGGCACACGAAGTAAGGTAGAGAGGTCTCCACGTGAAAGGGGAAGATGAGGGGGT
AACATCTGTAAGGTTTTAACTTGGCAGCACAACTCCTGAGATGGTGAATTTTTGCAGAAT
GTACATACGGGTTACGTGACAAGGTAAAAGATTTTAGGAAGGAGAATTAAGATGAAGAAA
AAAACGGGAGAGTTAAAAAAAGGCTACATATAAAATTGTTTTGCAGTGGAAAACTAAGAT
ATCTCAAGTTTTTAAGCTTACTTTACTCTCTACAAACCTAATAGTTTAAAATCTGTACAG
ATAATGTGAGGGGTATATGTTGCTTTAAGAATACTGGGCATATTAAACTTTTACTGAAAT
TTTCATCACTATTTTTGTTTAAGGGCATCCAATTCAGAAATCCTGCAGTTCATGCAGGAA
AAAGGCTTTAGCAAAAATTTCACTAAACTCCAATCTTTCTACGTGTTCAAGTAAGTTACT
TAAAAGCTTCCTTCTGTTTTTATTTCATCAGTGCCTTTTGTAGGAGTTTGAGCTGTTACT
TAGTACTATTTTAATTTCTCATTTTCTCTTTACCCACTGCCAAAGTAAAGGTGTTACACT
CTTTGTCATACATAGATGAAAAATCATAAAGGAGGGAGCAGTAGCCACTCTTTTCTTTAA
ATCAGTAACACGGTGACTCGGATCCTTTTGCAGTAACTGTTGAAACATAGGACAGCAGTC
ATCTTTTACAAGAACGCAAAACCCTGACTTTAAGCCTGCAATTCTTCGTCACCATCCAGC
CCCTAGAACACATTCACTTGTCAACTCCAGCAGCTTCTCTTTTACTTTATACATATCCTG
TCTGGTACAGGAGCCACAGCCACTGTTCCTATTTCAATTAAAGAAAATTAAAAATTCAGT
TCCTTAGTCCATATGCCACATTTCAAGTGTTCAGTTAACATCCCCATGAGGCTAGTGGCT
CCCATGTCAGAATGTACAGAAGGACATTTCCATCACTGCAGAAAGTTACACTGGGCAGTG
CTACTCTATACTAGGAAGCAGTAAACTCATCCTGTAAAGGGCCAGACAGTGGGAGTTCCC
AGTGTGGTTAAGAACCCAACTTAGTGAACGTGAGGGTGTAAGTCTGATCACAGGCCTCGT
TCAGTGGATTAAGGTTGCAAATGCAGCTCAGATCCTGTGTTGTTGTTGGTGTAGGCCAGC
AGCTCTGATTCC

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               2-575, gnl|bosTau2|chr15 (5835606-5836180)
               

               
               2-575, gnl|Hg17|chr5 (74046940-74047841)
               


               
               612-1430, gnl|bosTau2|chr15 (5836386-5837221)
               

               
               612-1430, gnl|Hg17|chr5 (74048033-74049159)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-575, gnl|bosTau2|chr15 (5835606-5836180)
               

               
               2-575, gnl|Hg17|chr5 (74046940-74047841)
               


               
               612-1430, gnl|bosTau2|chr15 (5836386-5837221)
               

               
               612-1430, gnl|Hg17|chr5 (74048033-74049159)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eje (0.0988338)

	2-575, gnl\|bosTau2\|chr15 (5835606-5836180)
	2-575, gnl\|Hg17\|chr5 (74046940-74047841)

	612-1430, gnl\|bosTau2\|chr15 (5836386-5837221)
	612-1430, gnl\|Hg17\|chr5 (74048033-74049159)

	tbr (0.154178)
	bfe (0.149858)
	lin (0.145603)
	ret (0.128733)
	sug (0.127291)
	tra (0.123092)
	eje (0.0988338)