Non-Coding RNA Search

Ss1.1-Pig4-TMW8056H01.5

Sequence:


               
               CTTATCTAGGGTTTCTGCCCCTTTTTTCCTAAATAGGGGCTAACAATTCTCTGGAAATAA
AGCACCTGTTAAATTAGCCTGACATATGCAAAAAGCAGGGGTACATCACCTCTTAGCAGC
TTTCCCAGCCAGCCATGGGTGATGGATTGGCCCTGCTTGGCTGTTGGCTGTTAGGAAGAA
GCAGCCGGTCAACAAGATCATATTTAGTTTATTTCAACACCAAACTATTAGACAGCGGCC
CATTTCTACCAGGTTCCTTTAAAGAAGGCCTCTAGGGAAGACATTGTTTGGTTTCCTTTT
TTGTAGTTGAGCACAGCAAGGAATGTCACTCCCATCCCAGCCACAGTTTTCTTAGGAGGG
TATATCCAAGAAGGGCTTGTCGTATCGAGCTGAAGGGAGCACCTCCCCTGAGCAGAGTGA
TCAAAAGCCATCGAGTCAGGGGAGGAGCCTGCTTCTTGCTGTACCTGAATCAGAAGGTCC
CTTTAAGCCAGTGCTGCATGTGCCAGTGCACGCACTTTTGTACTTAGAAGGGTTAAGAAA
TCCATGCTTGTTTGCCTCCTTGGTTGAGGTATCCCAGATGTAGTGTTCCCAACGAGGCAG
GCCCCTCTTCTGACCACTCCAGCCCATCTCCTGCTCTTGGCGACAGAGGAGACAACAGGA
CGTTTACAGCTTCCATATGGATTTAGTGTTCATTTACCTCAGTATTGCCGTGTTTAATTG
TGTCCTCATGCTTACAGTTAGCTCCCTGCTGCCTCCCACAGGTCTCACTCCAGCTCTTGC
CTCTGACCCATACAGCCTCTGGGCTCTGCCTCGGCTCCAAGAAAGGCTGCTGGGGTGGAG
AACCAGAAAGGTTCTGCTGTTGGGAATGTGCACCTGGGCAGAGGAGGCCCTGTTAGGATG
TGACTCTTAGCCAAGGCCAGGGACTGGGTCCCTGAGGTCTTAACCTCACTAGCATCAGTC
CTGGTCCCTAGCAGCAGATGAGATTAAAGGGGTTGGTTTGCTATTAAGTCAGGTGGGGAC
TCTGTCCTTGTCATGCTGTCCGTTTGGGCCACAGACAAGGATTGACCGTCTTGACGTTGT
ACACGTAGTTGGTGGTGTTGGATTATCCCATTGAAACTGGGACAGCTGTTCCCTTCTCAT
AGTGATAACTTGGGTCTGTTGTCCTCTAAGAAACATGAAACATCCTTCTTAAGCTGAACC
ACGTAAACTTGAATTCTGCGCACTGGGAGAAATGTGTCCTGTGTTTCAAGGATAAAACTG
TTCCAAAGGCTTCCAGGGTCATGATGGGATTTTTTAAATAAATGCAAAAAAAATAAAAAT
AAAAATAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTATCTAGGGTTTCTGCCCCTTTTTTCCTAAATAGGGGCTAACAATTCTCTGGAAATAA
AGCACCTGTTAAATTAGCCTGACATATGCAAAAAGCAGGGGTACATCACCTCTTAGCAGC
TTTCCCAGCCAGCCATGGGTGATGGATTGGCCCTGCTTGGCTGTTGGCTGTTAGGAAGAA
GCAGCCGGTCAACAAGATCATATTTAGTTTATTTCAACACCAAACTATTAGACAGCGGCC
CATTTCTACCAGGTTCCTTTAAAGAAGGCCTCTAGGGAAGACATTGTTTGGTTTCCTTTT
TTGTAGTTGAGCACAGCAAGGAATGTCACTCCCATCCCAGCCACAGTTTTCTTAGGAGGG
TATATCCAAGAAGGGCTTGTCGTATCGAGCTGAAGGGAGCACCTCCCCTGAGCAGAGTGA
TCAAAAGCCATCGAGTCAGGGGAGGAGCCTGCTTCTTGCTGTACCTGAATCAGAAGGTCC
CTTTAAGCCAGTGCTGCATGTGCCAGTGCACGCACTTTTGTACTTAGAAGGGTTAAGAAA
TCCATGCTTGTTTGCCTCCTTGGTTGAGGTATCCCAGATGTAGTGTTCCCAACGAGGCAG
GCCCCTCTTCTGACCACTCCAGCCCATCTCCTGCTCTTGGCGACAGAGGAGACAACAGGA
CGTTTACAGCTTCCATATGGATTTAGTGTTCATTTACCTCAGTATTGCCGTGTTTAATTG
TGTCCTCATGCTTACAGTTAGCTCCCTGCTGCCTCCCACAGGTCTCACTCCAGCTCTTGC
CTCTGACCCATACAGCCTCTGGGCTCTGCCTCGGCTCCAAGAAAGGCTGCTGGGGTGGAG
AACCAGAAAGGTTCTGCTGTTGGGAATGTGCACCTGGGCAGAGGAGGCCCTGTTAGGATG
TGACTCTTAGCCAAGGCCAGGGACTGGGTCCCTGAGGTCTTAACCTCACTAGCATCAGTC
CTGGTCCCTAGCAGCAGATGAGATTAAAGGGGTTGGTTTGCTATTAAGTCAGGTGGGGAC
TCTGTCCTTGTCATGCTGTCCGTTTGGGCCACAGACAAGGATTGACCGTCTTGACGTTGT
ACACGTAGTTGGTGGTGTTGGATTATCCCATTGAAACTGGGACAGCTGTTCCCTTCTCAT
AGTGATAACTTGGGTCTGTTGTCCTCTAAGAAACATGAAACATCCTTCTTAAGCTGAACC
ACGTAAACTTGAATTCTGCGCACTGGGAGAAATGTGTCCTGTGTTTCAAGGATAAAACTG
TTCCAAAGGCTTCCAGGGTCATGATGGGATTTTTTAAATAAATGCAAAAAAAATAAAAAT
AAAAATAAAAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-232, + strand, RNAz p=0.994238
               

               
               875-970, - strand, RNAz p=0.982738
               

               
               1009-1128, + strand, RNAz p=0.684145

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-232, + strand, RNAz p=0.994238
               

               
               875-970, - strand, RNAz p=0.982738
               

               
               1009-1128, + strand, RNAz p=0.684145

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of BC036782, +
               

               
               5' of CR614032, +

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC036782, +
               

               
               5' of CR614032, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-839, gnl|bosTau2|chr15 (48853946-48854769)
               

               
               1-839, gnl|Hg17|chr11 (47449737-47448914)
               

               
               1-839, gnl|Mm7|chr2 (90864668-90865460)
               


               
               875-1332, gnl|bosTau2|chr15 (48854764-48855218)
               

               
               875-1332, gnl|Hg17|chr11 (47448919-47448434)
               

               
               875-1332, gnl|Mm7|chr2 (90865455-90865915)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-839, gnl|bosTau2|chr15 (48853946-48854769)
               

               
               1-839, gnl|Hg17|chr11 (47449737-47448914)
               

               
               1-839, gnl|Mm7|chr2 (90864668-90865460)
               


               
               875-1332, gnl|bosTau2|chr15 (48854764-48855218)
               

               
               875-1332, gnl|Hg17|chr11 (47448919-47448434)
               

               
               875-1332, gnl|Mm7|chr2 (90865455-90865915)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               mcp (0.170648)
               

               
               cag (0.151194)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               cag (0.151194)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	1-232, + strand, RNAz p=0.994238
	875-970, - strand, RNAz p=0.982738
	1009-1128, + strand, RNAz p=0.684145

	1-839, gnl\|bosTau2\|chr15 (48853946-48854769)
	1-839, gnl\|Hg17\|chr11 (47449737-47448914)
	1-839, gnl\|Mm7\|chr2 (90864668-90865460)

	875-1332, gnl\|bosTau2\|chr15 (48854764-48855218)
	875-1332, gnl\|Hg17\|chr11 (47448919-47448434)
	875-1332, gnl\|Mm7\|chr2 (90865455-90865915)

	mcp (0.170648)
	cag (0.151194)
	jca (0.11396)
	cty (0.10408)
	jej (0.0989218)