Non-Coding RNA Search

Ss1.1-Pig4-TMW8056H02.3

Sequence:


               
               CGGGCGCTGCTGGCGCCATCTTCCCCAGCTGCGGGAGGGGTCACAGGTCAGTGCCAGATC
CTCGCCGCGAATGAGGAGGACCGAGGACGAAGTGGGTGATCAGACCCGGCAGTGGCCTTA
ACCTTCCGACGGGTGCCTTTTCCTCCGGGCAGCCCAGGATTCTCCAAGAGGACAATGGAT
TCTGGAACTCGCCCAGTTGGTAGCTGTAACAGCCCTGCAGGGCTGTCACGGGAATACAAA
CTAGTGATGCTAGGTGCTGGCGGTGTAGGGAAAAGCGCCATGACCATGCAGTTCATCAGC
CACCGATTTCCAGAAGATCATGACCCCACCATTGAAGATGCTTATAAAATCCGGATCCGT
ATTGATGATGAGCCTGCCAATCTGGACATTTTGGATACGGCTGGACAGGCAGAGTTTACC
GCCATGCGGGATCAGTATATGAGGGTAGAGGAGGGCACAGAAGTTCTGCCATATCACTTG
TATTTTCAGGATGTGACACTTTTGTTGTGATCCTGAGTCTCTAGGAAGGATTTCCCATTG
GGTCAGGACTCTACTGCTCTTTTTCATAAAGCCAATAATTTTTCTGTGCCAACCTACCTT
TGGTTGTTACCATTTTATATAGTAGATGCTTCTGTGGCTTGGGGAAAAATAGAAACAGTT
CTTATTTTTCATGTACTATGTTAAATTTAGAACATTGTTCAGGAATTCACACTACAGTGG
GAATTTTAGGAATAAAATTAATTTAGGGCTTAAGATAATTTACTTAGAACTCCAGAATAT
CTTTTCCTTTCTTTAAAGTAAAACTCATATACTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGCGCTGCTGGCGCCATCTTCCCCAGCTGCGGGAGGGGTCACAGGTCAGTGCCAGATC
CTCGCCGCGAATGAGGAGGACCGAGGACGAAGTGGGTGATCAGACCCGGCAGTGGCCTTA
ACCTTCCGACGGGTGCCTTTTCCTCCGGGCAGCCCAGGATTCTCCAAGAGGACAATGGAT
TCTGGAACTCGCCCAGTTGGTAGCTGTAACAGCCCTGCAGGGCTGTCACGGGAATACAAA
CTAGTGATGCTAGGTGCTGGCGGTGTAGGGAAAAGCGCCATGACCATGCAGTTCATCAGC
CACCGATTTCCAGAAGATCATGACCCCACCATTGAAGATGCTTATAAAATCCGGATCCGT
ATTGATGATGAGCCTGCCAATCTGGACATTTTGGATACGGCTGGACAGGCAGAGTTTACC
GCCATGCGGGATCAGTATATGAGGGTAGAGGAGGGCACAGAAGTTCTGCCATATCACTTG
TATTTTCAGGATGTGACACTTTTGTTGTGATCCTGAGTCTCTAGGAAGGATTTCCCATTG
GGTCAGGACTCTACTGCTCTTTTTCATAAAGCCAATAATTTTTCTGTGCCAACCTACCTT
TGGTTGTTACCATTTTATATAGTAGATGCTTCTGTGGCTTGGGGAAAAATAGAAACAGTT
CTTATTTTTCATGTACTATGTTAAATTTAGAACATTGTTCAGGAATTCACACTACAGTGG
GAATTTTAGGAATAAAATTAATTTAGGGCTTAAGATAATTTACTTAGAACTCCAGAATAT
CTTTTCCTTTCTTTAAAGTAAAACTCATATACTTGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|55588330|ref|XP_513868.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|55588330|ref|XP_513868.1|

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               132-275, gnl|bosTau2|chr3 (10700012-10700155)
               

               
               132-275, gnl|Hg17|chr1 (152693669-152693522)
               

               
               132-275, gnl|Mm7|chr3 (88831126-88831269)
               


               
               569-769, gnl|bosTau2|chr3 (10701205-10701406)
               

               
               569-769, gnl|Hg17|chr1 (152691890-152691343)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               132-275, gnl|bosTau2|chr3 (10700012-10700155)
               

               
               132-275, gnl|Hg17|chr1 (152693669-152693522)
               

               
               132-275, gnl|Mm7|chr3 (88831126-88831269)
               


               
               569-769, gnl|bosTau2|chr3 (10701205-10701406)
               

               
               569-769, gnl|Hg17|chr1 (152691890-152691343)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               cbl (0.344392)
               

               
               ton (0.1755)
               

               
               ctl (0.153069)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.344392)
               

               
               ton (0.1755)
               

               
               ctl (0.153069)

	132-275, gnl\|bosTau2\|chr3 (10700012-10700155)
	132-275, gnl\|Hg17\|chr1 (152693669-152693522)
	132-275, gnl\|Mm7\|chr3 (88831126-88831269)

	569-769, gnl\|bosTau2\|chr3 (10701205-10701406)
	569-769, gnl\|Hg17\|chr1 (152691890-152691343)