Non-Coding RNA Search

Ss1.1-Pig4-TMW8056H03.3

Sequence:


               
               GGGAAACAGTTTTGTGGGAAATATTCATATATATTTTTTCTCCCTTTTTCCATTTTTAGG
CCATGTTTTAAACTCATTCTAGTGCATGTATTTGAAGGGCTGGGCAGAAAATGAAAAAGC
AATACATTCCTTGATGCATTTGCATGAAGGTTGTTCACCTTTGTTTGGGTAGTTGTCCAT
TTGAGGCATGGGCAAATGAAGGACTTTGGTCATTTTGGACACTTAAGTAATGTTTGGTGT
CTGTTTCTTAGGAGTGATTGGGTAAGGAAGATGATTTTAGCTATTTATTTATAATATTTT
AACCCTTTATCTGTTTGCTTTTATACAGTGTTTCTTTCTAATTCTATGAGGTTCAGGGTT
CAAAATGATGGGAGGCGGGAGAGCAAGGTTTATTTGGTGGTAGGGAGCTTGTAGCTTGTG
CTGGTACTGTAGTATCAAGCCCAAGCAAATTAGTCAGAGCCCACCTTTGGAGTTAAGTAG
AAAACCAAAATGGTATTTTTGTTTTAGGAGGTTTTTCATAGGGTTCAGACATCATAGGAA
TATTAGGAGTTAATCTCTTTATGGAGGTATTGGTTTGTAGTTCTTTTTCCTTTAAAGAAA
GCTGGGCTGGCTTTTTGGGATGTAAACATGTTTTCAGATGCAGTAAGGTTTAAAAGTGGG
ACAGCCTCCCTGAACCAGTGGCATGAAAACCATTACAGAATTAATAGTTCTCCTATTGCT
ACAGTGTGCCAAAAGTCCACATCCCAGCATTTTGTTTGTAGGAGAACTGATGCCATTCCT
ATGAGCTGGGCTCCTTGTTTCCCTTCATCACAAGGATAAGGAGTCTAGACTTTAATTACT
CCAGTGTATGCTCCCTTAGATAAAACAGTAAAAAAATTTGCAGCCATAGTTCACTTACAA
CAGTTTCAAGCTCACTTGAAGTAATGGGGGCCTGGAATGCTAGGTGGGCATAAAGATAAA
CCCTTGCTACTATGTAGCAACACAATTGGACCTTTTTGAAGGAATAGGTCTGAGTCTGGA
TTCTGGGGGACATCAATAAGAAGCCCTTCTCATAAATATAGAAATCCAGGAGACCATTTG
AGTGCAACACAAGTTCTCAGTATTTGGAGGGTCCTCTCAAAATTCTGCGGCCTTACTTTG
ATTTTGACACCTGCACTGTGCCATTCCTGATGATTCCATTCAGGATCTGTATCAGCAGGA
CGGGGCACGATCCCCAGCACAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAAACAGTTTTGTGGGAAATATTCATATATATTTTTTCTCCCTTTTTCCATTTTTAGG
CCATGTTTTAAACTCATTCTAGTGCATGTATTTGAAGGGCTGGGCAGAAAATGAAAAAGC
AATACATTCCTTGATGCATTTGCATGAAGGTTGTTCACCTTTGTTTGGGTAGTTGTCCAT
TTGAGGCATGGGCAAATGAAGGACTTTGGTCATTTTGGACACTTAAGTAATGTTTGGTGT
CTGTTTCTTAGGAGTGATTGGGTAAGGAAGATGATTTTAGCTATTTATTTATAATATTTT
AACCCTTTATCTGTTTGCTTTTATACAGTGTTTCTTTCTAATTCTATGAGGTTCAGGGTT
CAAAATGATGGGAGGCGGGAGAGCAAGGTTTATTTGGTGGTAGGGAGCTTGTAGCTTGTG
CTGGTACTGTAGTATCAAGCCCAAGCAAATTAGTCAGAGCCCACCTTTGGAGTTAAGTAG
AAAACCAAAATGGTATTTTTGTTTTAGGAGGTTTTTCATAGGGTTCAGACATCATAGGAA
TATTAGGAGTTAATCTCTTTATGGAGGTATTGGTTTGTAGTTCTTTTTCCTTTAAAGAAA
GCTGGGCTGGCTTTTTGGGATGTAAACATGTTTTCAGATGCAGTAAGGTTTAAAAGTGGG
ACAGCCTCCCTGAACCAGTGGCATGAAAACCATTACAGAATTAATAGTTCTCCTATTGCT
ACAGTGTGCCAAAAGTCCACATCCCAGCATTTTGTTTGTAGGAGAACTGATGCCATTCCT
ATGAGCTGGGCTCCTTGTTTCCCTTCATCACAAGGATAAGGAGTCTAGACTTTAATTACT
CCAGTGTATGCTCCCTTAGATAAAACAGTAAAAAAATTTGCAGCCATAGTTCACTTACAA
CAGTTTCAAGCTCACTTGAAGTAATGGGGGCCTGGAATGCTAGGTGGGCATAAAGATAAA
CCCTTGCTACTATGTAGCAACACAATTGGACCTTTTTGAAGGAATAGGTCTGAGTCTGGA
TTCTGGGGGACATCAATAAGAAGCCCTTCTCATAAATATAGAAATCCAGGAGACCATTTG
AGTGCAACACAAGTTCTCAGTATTTGGAGGGTCCTCTCAAAATTCTGCGGCCTTACTTTG
ATTTTGACACCTGCACTGTGCCATTCCTGATGATTCCATTCAGGATCTGTATCAGCAGGA
CGGGGCACGATCCCCAGCACAACT

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               40-237, - strand, RNAz p=0.831894
               

               
               655-891, - strand, RNAz p=0.954508
               

               
               929-1124, + strand, RNAz p=0.606602

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-237, - strand, RNAz p=0.831894
               

               
               655-891, - strand, RNAz p=0.954508
               

               
               929-1124, + strand, RNAz p=0.606602

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               713-818, - strand, RNAmicro p=0.999959
               

               
               723-803, + strand, RNAmicro p=0.987189

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               713-818, - strand, RNAmicro p=0.999959
               

               
               723-803, + strand, RNAmicro p=0.987189

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_004774, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_004774, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1224, gnl|bosTau2|chr19 (32927356-32926142)
               

               
               1-1224, gnl|Hg17|chr17 (34816957-34815712)
               

               
               1-1224, gnl|Mm7|chr11 (98263999-98262822)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1224, gnl|bosTau2|chr19 (32927356-32926142)
               

               
               1-1224, gnl|Hg17|chr17 (34816957-34815712)
               

               
               1-1224, gnl|Mm7|chr11 (98263999-98262822)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fcc (0.197785)
               

               
               tbr (0.154178)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               tbr (0.154178)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

	40-237, - strand, RNAz p=0.831894
	655-891, - strand, RNAz p=0.954508
	929-1124, + strand, RNAz p=0.606602

	713-818, - strand, RNAmicro p=0.999959
	723-803, + strand, RNAmicro p=0.987189

	1-1224, gnl\|bosTau2\|chr19 (32927356-32926142)
	1-1224, gnl\|Hg17\|chr17 (34816957-34815712)
	1-1224, gnl\|Mm7\|chr11 (98263999-98262822)

	fcc (0.197785)
	tbr (0.154178)
	clu (0.119646)
	pgl (0.118483)
	ebs (0.118301)