Ss1.1-Pig4-TMW8056H15.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCTGCCCGCCCGCCCGCCCCTCCCGCCAGCAGCGTCGAGGCGTGGGGCTCGGGAACCACT CTCCCCGCTGGGTTGGCCACAGTCTGGATCCGCACGTCCCGTTCAGAAGCAGACTCGGGA ACTGCCTGAATGTGGTTTGGGACACGAACCTCATCATATTGATGAGCAAAACAAAAAAGA ACATTTCTTCCTTACCCCTTGAATTGAAATGGCACATTAAGACTTGTCACGGCTTCTCAC TGGGACTGGGACACCTTGTTTCTTCACCCTGCCCTCCTCTTGTCGCCGGCTCTCCCGCCA CCGCCTCCTGCCCGGGCCTCCAGGTCTGTCCACACACGTGTAAACACTGGGCCTGCTGGA CCTTCTGTTAACTACTCTCTTTACCTTCCATCTCCCACATTCTGATTGGGGGCTTCTATT TTCAGATTGTTTTTTCTTCCCTCAAGGCTTTGTTTTGGGTTTTGTCAATGAAGGCTTTTG TGTGTTGCAGGCACAGCCCCGTTGTGGGCTGCATCCTCCTTTTCCCTGTGGCCCTGGGCC CCTGTGCTCAGAGGGCTGCTTGGGGCCAGCCCCTACTCGTTCCCCACCCAGGGTTCCTCC AGGCCAAGTCATGGGGGTGGGGAGGGGTTGGGCCCCAGGCCTGGAGAGCCTGTGTAGTAA AGGGTCACTGGATGTTGGAGGGCCCCATCCTCCTGTCTGTCCCCATAACATGGGTCACCC ATCATCAGGCACCCAGGTGCACACTGCTTCCTGCTGTTGGCCATTCCTTCTTTGCCCCAC CCAGGACGTCTCTGCCCCCAAGATCATCCAGGGCCGGGGGCCTCTGTGCGTGGCAGAAGG GGACACTAGCAGGGCCTTCAAGAAGGGGCCAGGGGCCAGTTCCAGACAGTGGGCAGAACC CATGCTCAAGGTACACACATTAGCAGACGCCCTCTGTCCACCCCCACCCTGGAGCATGGC CAGGAGCCAGCTGGGCACCGCCCATCTGGGAGGCCCACAAAGAAGGTCTGTGCATAGGGC TCTGCGAACTTTCAGAGGAAGCCACCCAACCCCGCCTCAGAGAAGGTGTCTCTGCAGCTG TGCCGTCTGTCCCTCGGGTTTGCCGTGTGCAACCCAACCCCGAGCCTGAGCCATGGGAAG ACACCAAAGGCCCTCCCAGCAGATCCGGTCACACCTCTCTGCTTTAAGCCTTAGCCAACT AGTGACAAGTAAAACCAGATAATGCCCATGTGTTTTGGAACATTTATGTAAGATTGTCAT ATGAAATGTATTTGGGAACTACATTAAAACTTTTAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCTGCCCGCCCGCCCGCCCCTCCCGCCAGCAGCGTCGAGGCGTGGGGCTCGGGAACCACT CTCCCCGCTGGGTTGGCCACAGTCTGGATCCGCACGTCCCGTTCAGAAGCAGACTCGGGA ACTGCCTGAATGTGGTTTGGGACACGAACCTCATCATATTGATGAGCAAAACAAAAAAGA ACATTTCTTCCTTACCCCTTGAATTGAAATGGCACATTAAGACTTGTCACGGCTTCTCAC TGGGACTGGGACACCTTGTTTCTTCACCCTGCCCTCCTCTTGTCGCCGGCTCTCCCGCCA CCGCCTCCTGCCCGGGCCTCCAGGTCTGTCCACACACGTGTAAACACTGGGCCTGCTGGA CCTTCTGTTAACTACTCTCTTTACCTTCCATCTCCCACATTCTGATTGGGGGCTTCTATT TTCAGATTGTTTTTTCTTCCCTCAAGGCTTTGTTTTGGGTTTTGTCAATGAAGGCTTTTG TGTGTTGCAGGCACAGCCCCGTTGTGGGCTGCATCCTCCTTTTCCCTGTGGCCCTGGGCC CCTGTGCTCAGAGGGCTGCTTGGGGCCAGCCCCTACTCGTTCCCCACCCAGGGTTCCTCC AGGCCAAGTCATGGGGGTGGGGAGGGGTTGGGCCCCAGGCCTGGAGAGCCTGTGTAGTAA AGGGTCACTGGATGTTGGAGGGCCCCATCCTCCTGTCTGTCCCCATAACATGGGTCACCC ATCATCAGGCACCCAGGTGCACACTGCTTCCTGCTGTTGGCCATTCCTTCTTTGCCCCAC CCAGGACGTCTCTGCCCCCAAGATCATCCAGGGCCGGGGGCCTCTGTGCGTGGCAGAAGG GGACACTAGCAGGGCCTTCAAGAAGGGGCCAGGGGCCAGTTCCAGACAGTGGGCAGAACC CATGCTCAAGGTACACACATTAGCAGACGCCCTCTGTCCACCCCCACCCTGGAGCATGGC CAGGAGCCAGCTGGGCACCGCCCATCTGGGAGGCCCACAAAGAAGGTCTGTGCATAGGGC TCTGCGAACTTTCAGAGGAAGCCACCCAACCCCGCCTCAGAGAAGGTGTCTCTGCAGCTG TGCCGTCTGTCCCTCGGGTTTGCCGTGTGCAACCCAACCCCGAGCCTGAGCCATGGGAAG ACACCAAAGGCCCTCCCAGCAGATCCGGTCACACCTCTCTGCTTTAAGCCTTAGCCAACT AGTGACAAGTAAAACCAGATAATGCCCATGTGTTTTGGAACATTTATGTAAGATTGTCAT ATGAAATGTATTTGGGAACTACATTAAAACTTTTAA |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 113-220, - strand, RNAz p=0.581899 | |
| 543-694, - strand, RNAz p=0.773171 | |
| 735-969, - strand, RNAz p=0.974902 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 113-220, - strand, RNAz p=0.581899 | |
| 543-694, - strand, RNAz p=0.773171 | |
| 735-969, - strand, RNAz p=0.974902 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-982, gnl|bosTau2|chr7 (13194569-13195543) | |
| 1-982, gnl|Hg17|chr19 (5868578-5867493) | |
| 55-244, gnl|bosTau2|chr16 (50814750-50814559) | |
| 55-244, gnl|canFam2|chr7 (11405567-11405596) | |
| 55-244, gnl|hg17|chr1 (206347691-206347720) | |
| 55-244, gnl|loxAfr1|scaffold_14212 (6074-6103) | |
| 55-244, gnl|mm7|chr1 (192724348-192724326) | |
| 55-244, gnl|oryCun1|scaffold_113080 (8840-8868) | |
| 55-244, gnl|panTro1|chr1 (189963461-189963490) | |
| 55-244, gnl|rheMac2|chr1 (160608780-160608751) | |
| 55-244, gnl|rn3|chr13 (109195012-109194990) | |
| 1120-1296, gnl|bosTau2|chr7 (13195655-13195830) | |
| 1120-1296, gnl|canFam2|chr20 (57120292-57120148) | |
| 1120-1296, gnl|echTel1|scaffold_205740 (2775-2644) | |
| 1120-1296, gnl|hg17|chr19 (5867140-5867283) | |
| 1120-1296, gnl|Hg17|chr19 (5867335-5867156) | |
| 1120-1296, gnl|mm7|chr17 (54921605-54921473) | |
| 1120-1296, gnl|Mm7|chr17 (54921446-54921587) | |
| 1120-1296, gnl|monDom2|scaffold_85 (3871564-3871705) | |
| 1120-1296, gnl|panTro1|chr20 (6213170-6213313) | |
| 1120-1296, gnl|rheMac2|chr19 (5818725-5818868) | |
| 1120-1296, gnl|rn3|chrUn (25067456-25067595) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-982, gnl|bosTau2|chr7 (13194569-13195543) | |
| 1-982, gnl|Hg17|chr19 (5868578-5867493) | |
| 55-244, gnl|bosTau2|chr16 (50814750-50814559) | |
| 55-244, gnl|canFam2|chr7 (11405567-11405596) | |
| 55-244, gnl|hg17|chr1 (206347691-206347720) | |
| 55-244, gnl|loxAfr1|scaffold_14212 (6074-6103) | |
| 55-244, gnl|mm7|chr1 (192724348-192724326) | |
| 55-244, gnl|oryCun1|scaffold_113080 (8840-8868) | |
| 55-244, gnl|panTro1|chr1 (189963461-189963490) | |
| 55-244, gnl|rheMac2|chr1 (160608780-160608751) | |
| 55-244, gnl|rn3|chr13 (109195012-109194990) | |
| 1120-1296, gnl|bosTau2|chr7 (13195655-13195830) | |
| 1120-1296, gnl|canFam2|chr20 (57120292-57120148) | |
| 1120-1296, gnl|echTel1|scaffold_205740 (2775-2644) | |
| 1120-1296, gnl|hg17|chr19 (5867140-5867283) | |
| 1120-1296, gnl|Hg17|chr19 (5867335-5867156) | |
| 1120-1296, gnl|mm7|chr17 (54921605-54921473) | |
| 1120-1296, gnl|Mm7|chr17 (54921446-54921587) | |
| 1120-1296, gnl|monDom2|scaffold_85 (3871564-3871705) | |
| 1120-1296, gnl|panTro1|chr20 (6213170-6213313) | |
| 1120-1296, gnl|rheMac2|chr19 (5818725-5818868) | |
| 1120-1296, gnl|rn3|chrUn (25067456-25067595) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| ebs (0.236602) | |
| fbs (0.175346) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| cov (0.132153) | |
| cly (0.120642) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.236602) | |
| fbs (0.175346) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| cov (0.132153) | |
| cly (0.120642) |