Non-Coding RNA Search

Ss1.1-Pig4-TMW8056I09.5

Sequence:


               
               GGGTGTACGAGTGTCTTTTGAGCTGGTCTGGGGCAGGGCTGGGGCCTAGGGCCAGGCTGG
GATAGAGGGAAGAGGGTCAGACCCAGAGATCTGGGCAAGGCAAGAGAAGTCACGGCTGCA
CCGCCTGGTCGTGGGCCAGGACCACCGGCGCCCTGGCCTGGGGCAGCGCGAGCGCCCGAA
TCTGCGGCTGGACCCCAAGATGCCCGGCGAACAGCAGACAGAGGAGGAGGAGGAGGAAGA
AATGCAAGAGGAGATGGTGCTGCTGGTGAAGGGTGAGGAGGATGAGGGTGAAGAGAAGTA
TGAAGTGGTGAAACTCAAGATCCCCCTGGACAACAAGGAGGTCCCGAGCGAGCCGCCAGC
ACCGTCTGCCGACCCGGCGCGCCCACACGCGTGCCCGGACTGCGGCCGGGCCTTTGCGCG
CCGCTCCACGCTGGCCAAGCACGCCCGCACGCACACGGGCGAGCGGCCCTTCGCGTGCAC
CGAGTGCGGCCGGCGCTTCTCGCAGAAGTCGGCGCTGACCAAACACGGCCGCACGCACAC
GGGCGAGCGGCCCTACGAGTGCCCGGAGTGCGACAAGCGCTTCTCCGCCGCCTCGAACCT
GCGGCAGCACCGGCGGCGCCACACGGGCGAGAAGCCGTACGCATGCGCTCACTGCGGTCG
CCGCTTCGCGCAGAGCTCCAACTACGCCCAGCACCTGCGCGTGCACACGGGCGAGAAGCC
GTACGCGTGCCCGGACTGCGGACGCGCCTTCGGCGGCAGTTCGTGCCTGGCGCGCCACCG
ACGCACGCACACGGGCGAGCGGCCGTACGCATGCGCCGACTGCGGCACGCGCTTCGCGCA
GAGCTCGGCGCTGGCCAAGCACCGGCGCGTGCACACGGGCGAGAAGCCGCACCGCTGCGC
CGTGTGCGGCCGCCGTTTCGGCCACCGCTCTAACCTGGCGGAGCATGCGCGCACGCACAC
GGGGGAGCGGCCTTACCCGTGCTCCGAGTGCGGCCGGCGCTTCCGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTGTACGAGTGTCTTTTGAGCTGGTCTGGGGCAGGGCTGGGGCCTAGGGCCAGGCTGG
GATAGAGGGAAGAGGGTCAGACCCAGAGATCTGGGCAAGGCAAGAGAAGTCACGGCTGCA
CCGCCTGGTCGTGGGCCAGGACCACCGGCGCCCTGGCCTGGGGCAGCGCGAGCGCCCGAA
TCTGCGGCTGGACCCCAAGATGCCCGGCGAACAGCAGACAGAGGAGGAGGAGGAGGAAGA
AATGCAAGAGGAGATGGTGCTGCTGGTGAAGGGTGAGGAGGATGAGGGTGAAGAGAAGTA
TGAAGTGGTGAAACTCAAGATCCCCCTGGACAACAAGGAGGTCCCGAGCGAGCCGCCAGC
ACCGTCTGCCGACCCGGCGCGCCCACACGCGTGCCCGGACTGCGGCCGGGCCTTTGCGCG
CCGCTCCACGCTGGCCAAGCACGCCCGCACGCACACGGGCGAGCGGCCCTTCGCGTGCAC
CGAGTGCGGCCGGCGCTTCTCGCAGAAGTCGGCGCTGACCAAACACGGCCGCACGCACAC
GGGCGAGCGGCCCTACGAGTGCCCGGAGTGCGACAAGCGCTTCTCCGCCGCCTCGAACCT
GCGGCAGCACCGGCGGCGCCACACGGGCGAGAAGCCGTACGCATGCGCTCACTGCGGTCG
CCGCTTCGCGCAGAGCTCCAACTACGCCCAGCACCTGCGCGTGCACACGGGCGAGAAGCC
GTACGCGTGCCCGGACTGCGGACGCGCCTTCGGCGGCAGTTCGTGCCTGGCGCGCCACCG
ACGCACGCACACGGGCGAGCGGCCGTACGCATGCGCCGACTGCGGCACGCGCTTCGCGCA
GAGCTCGGCGCTGGCCAAGCACCGGCGCGTGCACACGGGCGAGAAGCCGCACCGCTGCGC
CGTGTGCGGCCGCCGTTTCGGCCACCGCTCTAACCTGGCGGAGCATGCGCGCACGCACAC
GGGGGAGCGGCCTTACCCGTGCTCCGAGTGCGGCCGGCGCTTCCGCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|40225843|gb|AAH11870.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|40225843|gb|AAH11870.2|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               419-538, - strand, RNAz p=0.546739
               

               
               891-1008, - strand, RNAz p=0.596502

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               419-538, - strand, RNAz p=0.546739
               

               
               891-1008, - strand, RNAz p=0.596502

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               339-1008, gnl|bosTau2|chr25 (24385454-24384785)
               


               
               376-622, gnl|bosTau2|chr11 (50368523-50368277)
               

               
               376-622, gnl|Hg17|chr19 (63766316-63766070)
               

               
               376-622, gnl|Mm7|chr7 (11630914-11630668)
               


               
               686-1007, gnl|bosTau2|chr13 (24162458-24162780)
               

               
               686-1007, gnl|Hg17|chr20 (18244182-18244504)
               

               
               686-1007, gnl|Mm7|chr5 (142277788-142278081)
               


               
               691-1005, gnl|bosTau2|chr11 (50368544-50368234)
               

               
               691-1005, gnl|Hg17|chr19 (63766337-63766027)
               

               
               691-1005, gnl|Mm7|chr7 (11630935-11630625)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               339-1008, gnl|bosTau2|chr25 (24385454-24384785)
               


               
               376-622, gnl|bosTau2|chr11 (50368523-50368277)
               

               
               376-622, gnl|Hg17|chr19 (63766316-63766070)
               

               
               376-622, gnl|Mm7|chr7 (11630914-11630668)
               


               
               686-1007, gnl|bosTau2|chr13 (24162458-24162780)
               

               
               686-1007, gnl|Hg17|chr20 (18244182-18244504)
               

               
               686-1007, gnl|Mm7|chr5 (142277788-142278081)
               


               
               691-1005, gnl|bosTau2|chr11 (50368544-50368234)
               

               
               691-1005, gnl|Hg17|chr19 (63766337-63766027)
               

               
               691-1005, gnl|Mm7|chr7 (11630935-11630625)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cst (0.140036)
               

               
               kid (0.129735)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)
               

               
               kid (0.129735)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

	419-538, - strand, RNAz p=0.546739
	891-1008, - strand, RNAz p=0.596502

	339-1008, gnl\|bosTau2\|chr25 (24385454-24384785)

	376-622, gnl\|bosTau2\|chr11 (50368523-50368277)
	376-622, gnl\|Hg17\|chr19 (63766316-63766070)
	376-622, gnl\|Mm7\|chr7 (11630914-11630668)

	686-1007, gnl\|bosTau2\|chr13 (24162458-24162780)
	686-1007, gnl\|Hg17\|chr20 (18244182-18244504)
	686-1007, gnl\|Mm7\|chr5 (142277788-142278081)

	691-1005, gnl\|bosTau2\|chr11 (50368544-50368234)
	691-1005, gnl\|Hg17\|chr19 (63766337-63766027)
	691-1005, gnl\|Mm7\|chr7 (11630935-11630625)