Non-Coding RNA Search

Ss1.1-Pig4-TMW8056I24.3.5

Sequence:


               
               TTTTGGGGACTGTTGAGACACTTGATTTCTTTATTAAACATCCAAGACCGGGTTCGAATG
GAAGGGACGAGGGACGCACACGCGCGCGTAAAGATAAGGAAAAAAAAAAGGCAATCCTGG
GAAGGTAGTGGTTTCTTCTTTTTCTTCTTCCTTCTCCTCTTTCCCTCCTCCTCCTCCTCC
TCTTCCTCCTCCTCCTCCTCCTCGCGATCTCTATGGCGGATTCGGATTCGTGCTGGGGGC
AGAGAGGGATCACTCACTGTAGGTTTGTGGCTGCTGTCAGATCCCCGTCTGTGAGTGATA
TGCGAGAGGACAGGAGCGGGTTTGGGAAGACAGAAAATCTGGAATTCACTCACTCACACA
CACTCACACACACACAGACACACACAGACACACTCACACACACGCACGCACGCACTCTCG
CTTCCTCTCACTCACACACACTCACACCCCCCACATATGCGCGCACACACACACACAAAC
ACGCACACACACACTCTCACACACACACAAGACAGGGCGAGGCGATGCCAGCAAACATCG
ATCCCGCTGAACAAACTGAACATTAACAAACTCCTCCTCCTCCTCCTCTCCCCGCGACCT
GATGACAGGGAGAAATTTACTCCCCAGCCGCAGAGCGCCAGGCAGAGGGAGTCTATTAAA
GGGACAGTGTCCCGCCGGGGAGCTGGGGGCGGGGACCCGGGCTTGCCGCCCGGGGTGGGC
TCCTCCGTGAGCCCTCTTCCCTCTTCGCTGGTGCGAGGACGTGCCCACCGGGCGAGCAGA
CACCCCTCGGGGGAGGGGTGGGAGAGGAGGGGATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTGGGGACTGTTGAGACACTTGATTTCTTTATTAAACATCCAAGACCGGGTTCGAATG
GAAGGGACGAGGGACGCACACGCGCGCGTAAAGATAAGGAAAAAAAAAAGGCAATCCTGG
GAAGGTAGTGGTTTCTTCTTTTTCTTCTTCCTTCTCCTCTTTCCCTCCTCCTCCTCCTCC
TCTTCCTCCTCCTCCTCCTCCTCGCGATCTCTATGGCGGATTCGGATTCGTGCTGGGGGC
AGAGAGGGATCACTCACTGTAGGTTTGTGGCTGCTGTCAGATCCCCGTCTGTGAGTGATA
TGCGAGAGGACAGGAGCGGGTTTGGGAAGACAGAAAATCTGGAATTCACTCACTCACACA
CACTCACACACACACAGACACACACAGACACACTCACACACACGCACGCACGCACTCTCG
CTTCCTCTCACTCACACACACTCACACCCCCCACATATGCGCGCACACACACACACAAAC
ACGCACACACACACTCTCACACACACACAAGACAGGGCGAGGCGATGCCAGCAAACATCG
ATCCCGCTGAACAAACTGAACATTAACAAACTCCTCCTCCTCCTCCTCTCCCCGCGACCT
GATGACAGGGAGAAATTTACTCCCCAGCCGCAGAGCGCCAGGCAGAGGGAGTCTATTAAA
GGGACAGTGTCCCGCCGGGGAGCTGGGGGCGGGGACCCGGGCTTGCCGCCCGGGGTGGGC
TCCTCCGTGAGCCCTCTTCCCTCTTCGCTGGTGCGAGGACGTGCCCACCGGGCGAGCAGA
CACCCCTCGGGGGAGGGGTGGGAGAGGAGGGGATGA

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               1-200, gnl|bosTau2|chr13 (61788063-61788273)
               

               
               1-200, gnl|Hg17|chr20 (51022896-51022678)
               

               
               1-200, gnl|Mm7|chr2 (169426086-169425879)
               


               
               347-509, gnl|bosTau2|chr26 (33530519-33530354)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-200, gnl|bosTau2|chr13 (61788063-61788273)
               

               
               1-200, gnl|Hg17|chr20 (51022896-51022678)
               

               
               1-200, gnl|Mm7|chr2 (169426086-169425879)
               


               
               347-509, gnl|bosTau2|chr26 (33530519-33530354)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cki (0.165235)
               

               
               che (0.136314)
               

               
               ute (0.132784)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)
               

               
               che (0.136314)
               

               
               ute (0.132784)

	1-200, gnl\|bosTau2\|chr13 (61788063-61788273)
	1-200, gnl\|Hg17\|chr20 (51022896-51022678)
	1-200, gnl\|Mm7\|chr2 (169426086-169425879)

	347-509, gnl\|bosTau2\|chr26 (33530519-33530354)