Ss1.1-Pig4-TMW8056J02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAAAATGCCGAAACCGATCAATGTAAGAGTAACTACAATGGATGCTGAGCTGGAATTTG CCATTCAGCCCAATACAACTGGCAAACAGCTTTTTGATCAGGTGGTGAAAACAGTTGGTT TGCGTGAGGTTTGGTTTTTTGGGCTGCAGTATGTGGACAGCAAGGGATATTCTACATGGC TTAAACTAAATAAAAAGGTGACACAGCAAGATGTTAAAAAAGAGAATCCTTTGCAGTTCA AATTTAGAGCTAAGTTCTTTCCTGAAGATGTTTCTGAGGAACTGATTCAAGAAATAACGC AGAGACTTTTCTTCTTGCAAGTTAAAGAAGCTATCTTAAATGATGAGATATATTGTCCCC CAGAAACGGCAGTTCTTTTGGCTTCCTATGCTGTCCAGGCCAAGTACGGAGATTATAATA AAGAGATTCATAAACCAGGCTACCTGGCTAATGATAGGCTCCTACCCCAACGTGTTTTGG AACAACACAAATTGACAAAAGAACAGTGGGAAGAAAGGATACAGAACTGGCATGAAGAAC ATAGAGGAATGCTGAGGGAAGATTCTATGATGGAATACCTGAAGATTGCACAAGATCTAG AAATGTATGGAGTCAACTATTTTGAAATAAAAAATAAAAAGGGAACTGAATTGTGGCTAG GCGTTGATGCTTTGGGTCTGAATATTTATGAACATGATGATAAGTTAACACCTAAAATTG GTTTTCCTTGGAGTGAAATCAGAAATATTTCATTTAATGACAAAAAATTTGTTATAAAGC CAATCGACAAAAAGGCACCTGATTTTGTTTTTTATGCACCTCGCCTGAGAATCAATAAGC GGATCTTGGCATTATGCATGGGAAACCATGAACTGTACATGCGAAGAAGGAAGCCTGACA CCATTGAAGTGCAACAGATGAAGGCTCAGGCGAGGGAGGAGAAACATCAGAAGCAGCTGG AAAGGGCACAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAAAATGCCGAAACCGATCAATGTAAGAGTAACTACAATGGATGCTGAGCTGGAATTTG CCATTCAGCCCAATACAACTGGCAAACAGCTTTTTGATCAGGTGGTGAAAACAGTTGGTT TGCGTGAGGTTTGGTTTTTTGGGCTGCAGTATGTGGACAGCAAGGGATATTCTACATGGC TTAAACTAAATAAAAAGGTGACACAGCAAGATGTTAAAAAAGAGAATCCTTTGCAGTTCA AATTTAGAGCTAAGTTCTTTCCTGAAGATGTTTCTGAGGAACTGATTCAAGAAATAACGC AGAGACTTTTCTTCTTGCAAGTTAAAGAAGCTATCTTAAATGATGAGATATATTGTCCCC CAGAAACGGCAGTTCTTTTGGCTTCCTATGCTGTCCAGGCCAAGTACGGAGATTATAATA AAGAGATTCATAAACCAGGCTACCTGGCTAATGATAGGCTCCTACCCCAACGTGTTTTGG AACAACACAAATTGACAAAAGAACAGTGGGAAGAAAGGATACAGAACTGGCATGAAGAAC ATAGAGGAATGCTGAGGGAAGATTCTATGATGGAATACCTGAAGATTGCACAAGATCTAG AAATGTATGGAGTCAACTATTTTGAAATAAAAAATAAAAAGGGAACTGAATTGTGGCTAG GCGTTGATGCTTTGGGTCTGAATATTTATGAACATGATGATAAGTTAACACCTAAAATTG GTTTTCCTTGGAGTGAAATCAGAAATATTTCATTTAATGACAAAAAATTTGTTATAAAGC CAATCGACAAAAAGGCACCTGATTTTGTTTTTTATGCACCTCGCCTGAGAATCAATAAGC GGATCTTGGCATTATGCATGGGAAACCATGAACTGTACATGCGAAGAAGGAAGCCTGACA CCATTGAAGTGCAACAGATGAAGGCTCAGGCGAGGGAGGAGAAACATCAGAAGCAGCTGG AAAGGGCACAAC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 180-472, gnl|bosTau2|chr15 (8769351-8769058) | |
| 180-472, gnl|Hg17|chr11 (109640188-109639895) | |
| 180-472, gnl|Mm7|chr9 (52044009-52044292) | |
| 555-705, gnl|bosTau2|chr15 (8760509-8760359) | |
| 555-705, gnl|canFam2|chr5 (25599936-25599838) | |
| 555-705, gnl|danRer3|chr20 (16607543-16607446) | |
| 555-705, gnl|dasNov1|scaffold_2940 (7431-7333) | |
| 555-705, gnl|echTel1|scaffold_225947 (6138-6040) | |
| 555-705, gnl|fr1|chrUn (172178587-172178490) | |
| 555-705, gnl|galGal2|chr1 (171590000-171589902) | |
| 555-705, gnl|hg17|chr11 (4189203-4189297) | |
| 555-705, gnl|Hg17|chr11 (109633850-109633700) | |
| 555-705, gnl|loxAfr1|scaffold_24170 (20291-20389) | |
| 555-705, gnl|mm7|chr8 (5046894-5046796) | |
| 555-705, gnl|Mm7|chr9 (52046501-52046651) | |
| 555-705, gnl|monDom2|scaffold_2 (132099514-132099416) | |
| 555-705, gnl|oryCun1|scaffold_48777 (2084-2182) | |
| 555-705, gnl|panTro1|chr9 (4321058-4321152) | |
| 555-705, gnl|rheMac2|chr14 (108753739-108753837) | |
| 555-705, gnl|rn3|chr8 (55446878-55446780) | |
| 555-705, gnl|tetNig1|chr3 (6336937-6337034) | |
| 555-705, gnl|xenTro1|scaffold_396 (564553-564459) | |
| 802-965, gnl|bosTau2|chr15 (8758245-8758082) | |
| 802-965, gnl|canFam2|chr5 (25602835-25602672) | |
| 802-965, gnl|canFam2|chr5 (25602671-25602803) | |
| 802-965, gnl|danRer3|chr20 (16617717-16617553) | |
| 802-965, gnl|danRer3|chrNA (22399770-22399638) | |
| 802-965, gnl|dasNov1|scaffold_2940 (10748-10593) | |
| 802-965, gnl|dasNov1|scaffold_59573 (9157-9285) | |
| 802-965, gnl|echTel1|scaffold_225947 (8969-8805) | |
| 802-965, gnl|echTel1|scaffold_225947 (8805-8937) | |
| 802-965, gnl|fr1|chrUn (172179531-172179273) | |
| 802-965, gnl|fr1|chrUn (232203246-232203378) | |
| 802-965, gnl|galGal2|chr1 (171592343-171592179) | |
| 802-965, gnl|galGal2|chr1 (171592179-171592311) | |
| 802-965, gnl|hg17|chr11 (4188943-4189108) | |
| 802-965, gnl|hg17|chrX (27296725-27296857) | |
| 802-965, gnl|loxAfr1|scaffold_24170 (20026-20192) | |
| 802-965, gnl|loxAfr1|scaffold_24170 (20191-20058) | |
| 802-965, gnl|mm7|chr8 (5047132-5046977) | |
| 802-965, gnl|mm7|chr9 (52047989-52048121) | |
| 802-965, gnl|monDom2|scaffold_1 (89800357-89800489) | |
| 802-965, gnl|monDom2|scaffold_2 (132109736-132109573) | |
| 802-965, gnl|oryCun1|scaffold_48777 (1824-1988) | |
| 802-965, gnl|oryCun1|scaffold_48777 (1988-1856) | |
| 802-965, gnl|panTro1|chr9 (4320798-4320963) | |
| 802-965, gnl|panTro1|chr9 (4320957-4320830) | |
| 802-965, gnl|rheMac2|chr14 (108749924-108750084) | |
| 802-965, gnl|rheMac2|chrX (25364122-25364254) | |
| 802-965, gnl|rn3|chr8 (55448862-55448701) | |
| 802-965, gnl|rn3|chr8 (55448701-55448833) | |
| 802-965, gnl|tetNig1|chr3 (6336101-6336356) | |
| 802-965, gnl|tetNig1|chr3 (6336265-6336133) | |
| 802-965, gnl|xenTro1|scaffold_327 (3929-3797) | |
| 802-965, gnl|xenTro1|scaffold_396 (566579-566416) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 180-472, gnl|bosTau2|chr15 (8769351-8769058) | |
| 180-472, gnl|Hg17|chr11 (109640188-109639895) | |
| 180-472, gnl|Mm7|chr9 (52044009-52044292) | |
| 555-705, gnl|bosTau2|chr15 (8760509-8760359) | |
| 555-705, gnl|canFam2|chr5 (25599936-25599838) | |
| 555-705, gnl|danRer3|chr20 (16607543-16607446) | |
| 555-705, gnl|dasNov1|scaffold_2940 (7431-7333) | |
| 555-705, gnl|echTel1|scaffold_225947 (6138-6040) | |
| 555-705, gnl|fr1|chrUn (172178587-172178490) | |
| 555-705, gnl|galGal2|chr1 (171590000-171589902) | |
| 555-705, gnl|hg17|chr11 (4189203-4189297) | |
| 555-705, gnl|Hg17|chr11 (109633850-109633700) | |
| 555-705, gnl|loxAfr1|scaffold_24170 (20291-20389) | |
| 555-705, gnl|mm7|chr8 (5046894-5046796) | |
| 555-705, gnl|Mm7|chr9 (52046501-52046651) | |
| 555-705, gnl|monDom2|scaffold_2 (132099514-132099416) | |
| 555-705, gnl|oryCun1|scaffold_48777 (2084-2182) | |
| 555-705, gnl|panTro1|chr9 (4321058-4321152) | |
| 555-705, gnl|rheMac2|chr14 (108753739-108753837) | |
| 555-705, gnl|rn3|chr8 (55446878-55446780) | |
| 555-705, gnl|tetNig1|chr3 (6336937-6337034) | |
| 555-705, gnl|xenTro1|scaffold_396 (564553-564459) | |
| 802-965, gnl|bosTau2|chr15 (8758245-8758082) | |
| 802-965, gnl|canFam2|chr5 (25602835-25602672) | |
| 802-965, gnl|canFam2|chr5 (25602671-25602803) | |
| 802-965, gnl|danRer3|chr20 (16617717-16617553) | |
| 802-965, gnl|danRer3|chrNA (22399770-22399638) | |
| 802-965, gnl|dasNov1|scaffold_2940 (10748-10593) | |
| 802-965, gnl|dasNov1|scaffold_59573 (9157-9285) | |
| 802-965, gnl|echTel1|scaffold_225947 (8969-8805) | |
| 802-965, gnl|echTel1|scaffold_225947 (8805-8937) | |
| 802-965, gnl|fr1|chrUn (172179531-172179273) | |
| 802-965, gnl|fr1|chrUn (232203246-232203378) | |
| 802-965, gnl|galGal2|chr1 (171592343-171592179) | |
| 802-965, gnl|galGal2|chr1 (171592179-171592311) | |
| 802-965, gnl|hg17|chr11 (4188943-4189108) | |
| 802-965, gnl|hg17|chrX (27296725-27296857) | |
| 802-965, gnl|loxAfr1|scaffold_24170 (20026-20192) | |
| 802-965, gnl|loxAfr1|scaffold_24170 (20191-20058) | |
| 802-965, gnl|mm7|chr8 (5047132-5046977) | |
| 802-965, gnl|mm7|chr9 (52047989-52048121) | |
| 802-965, gnl|monDom2|scaffold_1 (89800357-89800489) | |
| 802-965, gnl|monDom2|scaffold_2 (132109736-132109573) | |
| 802-965, gnl|oryCun1|scaffold_48777 (1824-1988) | |
| 802-965, gnl|oryCun1|scaffold_48777 (1988-1856) | |
| 802-965, gnl|panTro1|chr9 (4320798-4320963) | |
| 802-965, gnl|panTro1|chr9 (4320957-4320830) | |
| 802-965, gnl|rheMac2|chr14 (108749924-108750084) | |
| 802-965, gnl|rheMac2|chrX (25364122-25364254) | |
| 802-965, gnl|rn3|chr8 (55448862-55448701) | |
| 802-965, gnl|rn3|chr8 (55448701-55448833) | |
| 802-965, gnl|tetNig1|chr3 (6336101-6336356) | |
| 802-965, gnl|tetNig1|chr3 (6336265-6336133) | |
| 802-965, gnl|xenTro1|scaffold_327 (3929-3797) | |
| 802-965, gnl|xenTro1|scaffold_396 (566579-566416) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (0.512033) | |
| csk (0.140746) | |
| ldo (0.0970026) |