Non-Coding RNA Search

Ss1.1-Pig4-TMW8056J07.5

Sequence:


               
               GGAATTCCTAGAGTATTTTAACGTAATATTACTGTGAAAAGCATTCCATCACATATTCAT
GAGCAAATTGCTACACATTTTAAAAATTGTACTTTACAACTTAGTACAAATATTTTAGGC
CTCAGTCTTCAAATCACTGATATTTTAAATTTGGCAATGGATATGAAATTACTTTCAGTC
TTACAGAATGATTATATTGTTAAAATGCTTGTTAACATCTTAGGAAGGTTGGAGTTTCCA
TCTTTTTGGCGTTAATGTTTAAATTTTTTTTACTTATTTTGATAGTGTAAGAGGAAATCG
TATTCATGCAATTAAATTAGTAAAATTATACTCTAAAGAAAGTTTTTTAGTTGTTAAAAT
TTGTCATTACTGGGCTTAAATTTTGGCCTCATACTCATTTACAATATATATTAACACATT
TGATTATGAAGTGAAATAGTCTTAAATATGATGTATGATGCACCTGCATATAAATGAAAA
CGGTGTGCACAAAGACACTTTACTATGGGAGCTGAACTGGAGGATTTTTGAAAGCATGTG
ATATTGCACCTAAAATTGTGTTCTTAGTGACTATGCTAAATTTATTGTACTTGATGGATG
AATGTATTTAGTCAGAGTTACTTTTGTTTAAATGTCTAAGCAATGTCTTTTTTTAAAATG
TAATTTGTACTATTGATGGGGGGTGTTCTTGGACTGCAGGGGTTGTTGTTAATGTGTGAT
TTGTGTTTTTATTTTATAGAATCATCTAATGTGATACAATGATTTTTATATAAGTGATAT
TTAGATAATTCTAATAACTGTATATTTGACACCCTATTAAAATGTTTTGCATTGGCGCTT
TTTTCTTTAATTGTAATATGCTAACAAACTCATGATAGTTTGAAAATAACTTGTTCATTC
AACAAACATTTGAGTACATACTATGTACCAAAATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAATTCCTAGAGTATTTTAACGTAATATTACTGTGAAAAGCATTCCATCACATATTCAT
GAGCAAATTGCTACACATTTTAAAAATTGTACTTTACAACTTAGTACAAATATTTTAGGC
CTCAGTCTTCAAATCACTGATATTTTAAATTTGGCAATGGATATGAAATTACTTTCAGTC
TTACAGAATGATTATATTGTTAAAATGCTTGTTAACATCTTAGGAAGGTTGGAGTTTCCA
TCTTTTTGGCGTTAATGTTTAAATTTTTTTTACTTATTTTGATAGTGTAAGAGGAAATCG
TATTCATGCAATTAAATTAGTAAAATTATACTCTAAAGAAAGTTTTTTAGTTGTTAAAAT
TTGTCATTACTGGGCTTAAATTTTGGCCTCATACTCATTTACAATATATATTAACACATT
TGATTATGAAGTGAAATAGTCTTAAATATGATGTATGATGCACCTGCATATAAATGAAAA
CGGTGTGCACAAAGACACTTTACTATGGGAGCTGAACTGGAGGATTTTTGAAAGCATGTG
ATATTGCACCTAAAATTGTGTTCTTAGTGACTATGCTAAATTTATTGTACTTGATGGATG
AATGTATTTAGTCAGAGTTACTTTTGTTTAAATGTCTAAGCAATGTCTTTTTTTAAAATG
TAATTTGTACTATTGATGGGGGGTGTTCTTGGACTGCAGGGGTTGTTGTTAATGTGTGAT
TTGTGTTTTTATTTTATAGAATCATCTAATGTGATACAATGATTTTTATATAAGTGATAT
TTAGATAATTCTAATAACTGTATATTTGACACCCTATTAAAATGTTTTGCATTGGCGCTT
TTTTCTTTAATTGTAATATGCTAACAAACTCATGATAGTTTGAAAATAACTTGTTCATTC
AACAAACATTTGAGTACATACTATGTACCAAAATCT

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               12-936, gnl|bosTau2|chr26 (246537-247466)
               

               
               12-936, gnl|Hg17|chr10 (59622127-59621199)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-936, gnl|bosTau2|chr26 (246537-247466)
               

               
               12-936, gnl|Hg17|chr10 (59622127-59621199)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cbe (0.239234)
               

               
               fhi (0.169578)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               ret (0.128733)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               fhi (0.169578)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               ret (0.128733)

	12-936, gnl\|bosTau2\|chr26 (246537-247466)
	12-936, gnl\|Hg17\|chr10 (59622127-59621199)

	cbe (0.239234)
	fhi (0.169578)
	lin (0.145603)
	lnt (0.142308)
	ret (0.128733)