Non-Coding RNA Search

Ss1.1-Pig4-TMW8056J15.3

Sequence:


               
               CCCGGGAGCAGCAGCAGCAGCTTCTTGCTTCTCAACTTCAGCGCCCACCCGGCCTTAGAC
CTGCACCCCTCGCATCTCCAGCTGCGGCGCAGGGAGCCGAGCTCCGCGCAGTAACTTCCT
CCGCGCGGCTCCTCCACCCCCGGGAGTCCCGGGTGCGCACCTGCAAACTCCGCCTTGTGC
ACCTGCGGCCCTTGAGCCAGAGCTATGGCCAACGCGGGGCTGCAGCTGCTGGGCTTCATC
CTGGCCTTCCTGGGCTGGATCGGCTCCATCGTCAGCACCGCACTGCCTCAGTGGAAGATT
TACTCCTACGCTGGTGACAACATTGTGACGGCCCAGGCCATCTACGAGGGGCTGTGGATG
TCCTGCGTGTCGCAGAGCACCGGGCAGATCCAGTGCAAAGTCTTCGACTCCTTGCTGAAT
CTGAACAGCACTTTGCAAGCAACCCGTGCCTTGATGGTAATTGGCATCCTGCTGGGACTA
ATAGCCATCTTTGTGGCCACTGTTGGCATGAAGTGTATGAAGTGCATGGAAGATGATGAG
GTGCAGAAGATGCGGATGGCTGTCATTGGGGGAGTGATCTTTCTTATTTCAGGTCTGGCT
ATCTTAGTTGCCACAGCATGGTATGGTAACAGAATTGTTCAAGAATTCTATGACCCCATG
ACCCCAGTCAATGCCAGATATGAATTTGGTCAGGCTCTCTTCACTGGCTGGGCTGCTGCT
TCTCTCTGCCTTCTGGGAGGTGCCCTACTTTGCTGCTCCTGTCCCCGAAAAACAACATCT
TACCCAACACCAAGGCCCTATCCAAAACCTTCGCCTTCCAGTGGGAAAGACTACGTGTGA
CACAGAATCAAAAGGACAAAACCGTGTGGGAACAACCAGAAAATGGACATTGAAATACTG
TCATTGACACTGAGATCTTCGACTTTTGACTGTTAGAGTCTGAACTGTGGTATAACCAAA
AAAAAACATTATTTTTTAAAATACCCATTGCTAAAAATGACATGGTCTTATTTTATCTCC
TTTCCTCAATACAGGAGGGAAGCCATTTTCATGTGTATTACTGCTTCCCACTGAGTAATC
ATCTCGAATGTGGGGAGAGGGCGGTCCTTAAATATATATAGATATGTACATATACATGTT
TTTTCTATAAAAAATTAGTAAAAGCTCTTATTCTCTTTATGTTGGCATAAGCATACTTAA
AATATACCTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGGGAGCAGCAGCAGCAGCTTCTTGCTTCTCAACTTCAGCGCCCACCCGGCCTTAGAC
CTGCACCCCTCGCATCTCCAGCTGCGGCGCAGGGAGCCGAGCTCCGCGCAGTAACTTCCT
CCGCGCGGCTCCTCCACCCCCGGGAGTCCCGGGTGCGCACCTGCAAACTCCGCCTTGTGC
ACCTGCGGCCCTTGAGCCAGAGCTATGGCCAACGCGGGGCTGCAGCTGCTGGGCTTCATC
CTGGCCTTCCTGGGCTGGATCGGCTCCATCGTCAGCACCGCACTGCCTCAGTGGAAGATT
TACTCCTACGCTGGTGACAACATTGTGACGGCCCAGGCCATCTACGAGGGGCTGTGGATG
TCCTGCGTGTCGCAGAGCACCGGGCAGATCCAGTGCAAAGTCTTCGACTCCTTGCTGAAT
CTGAACAGCACTTTGCAAGCAACCCGTGCCTTGATGGTAATTGGCATCCTGCTGGGACTA
ATAGCCATCTTTGTGGCCACTGTTGGCATGAAGTGTATGAAGTGCATGGAAGATGATGAG
GTGCAGAAGATGCGGATGGCTGTCATTGGGGGAGTGATCTTTCTTATTTCAGGTCTGGCT
ATCTTAGTTGCCACAGCATGGTATGGTAACAGAATTGTTCAAGAATTCTATGACCCCATG
ACCCCAGTCAATGCCAGATATGAATTTGGTCAGGCTCTCTTCACTGGCTGGGCTGCTGCT
TCTCTCTGCCTTCTGGGAGGTGCCCTACTTTGCTGCTCCTGTCCCCGAAAAACAACATCT
TACCCAACACCAAGGCCCTATCCAAAACCTTCGCCTTCCAGTGGGAAAGACTACGTGTGA
CACAGAATCAAAAGGACAAAACCGTGTGGGAACAACCAGAAAATGGACATTGAAATACTG
TCATTGACACTGAGATCTTCGACTTTTGACTGTTAGAGTCTGAACTGTGGTATAACCAAA
AAAAAACATTATTTTTTAAAATACCCATTGCTAAAAATGACATGGTCTTATTTTATCTCC
TTTCCTCAATACAGGAGGGAAGCCATTTTCATGTGTATTACTGCTTCCCACTGAGTAATC
ATCTCGAATGTGGGGAGAGGGCGGTCCTTAAATATATATAGATATGTACATATACATGTT
TTTTCTATAAAAAATTAGTAAAAGCTCTTATTCTCTTTATGTTGGCATAAGCATACTTAA
AATATACCTAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               CLD1_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               CLD1_BOVIN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               279-520, + strand, RNAz p=0.937783

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               279-520, + strand, RNAz p=0.937783

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK126462, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK126462, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               200-777, gnl|bosTau2|chr25 (30057269-30057844)
               

               
               200-777, gnl|Hg17|chr7 (72690178-72690753)
               

               
               200-777, gnl|Mm7|chr5 (133918030-133917452)
               


               
               201-756, gnl|bosTau2|chr17 (43900821-43900269)
               

               
               201-756, gnl|Hg17|chr22 (17886336-17885784)
               

               
               201-756, gnl|Mm7|chr16_random (3263238-3262686)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               200-777, gnl|bosTau2|chr25 (30057269-30057844)
               

               
               200-777, gnl|Hg17|chr7 (72690178-72690753)
               

               
               200-777, gnl|Mm7|chr5 (133918030-133917452)
               


               
               201-756, gnl|bosTau2|chr17 (43900821-43900269)
               

               
               201-756, gnl|Hg17|chr22 (17886336-17885784)
               

               
               201-756, gnl|Mm7|chr16_random (3263238-3262686)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               pla (0.267344)
               

               
               eep (0.245128)
               

               
               mcp (0.170648)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               eep (0.245128)
               

               
               mcp (0.170648)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

	200-777, gnl\|bosTau2\|chr25 (30057269-30057844)
	200-777, gnl\|Hg17\|chr7 (72690178-72690753)
	200-777, gnl\|Mm7\|chr5 (133918030-133917452)

	201-756, gnl\|bosTau2\|chr17 (43900821-43900269)
	201-756, gnl\|Hg17\|chr22 (17886336-17885784)
	201-756, gnl\|Mm7\|chr16_random (3263238-3262686)

	pla (0.267344)
	eep (0.245128)
	mcp (0.170648)
	eru (0.120048)
	ebs (0.118301)