Non-Coding RNA Search

Ss1.1-Pig4-TMW8056K05.5

Sequence:


               
               GGGAACTCCTGCTTCTCTTTTTTAAATGAGAAAAACTTAGGAGAGGTTGATAAGAAAGGC
TGAAGACAGGTTATCCGAGATGTTTCTGCAAAAGTTGGTTATCTTTAATGTGGTCCGAAA
GAAATGGAGGAGAGTGCAGATTGGGAGTCCTGGCTTATCTAGCGAGGGTGACCCTGGACC
AGTGCTGTTCAGTAGAACTTGGTGTTGGGGAGATGGAATTTTGTGCCAGCCACTGCAGTG
CTAGCTACATGTAGTTATTGAACATTTGAAATATGGCTAAGTGACGGAGGCACTGAATTT
TAAATTTTATTCATTTAGCTAAGTTTAAATGGTTACCTGTGGCTAGTGGCTGTGGTGTTG
AACAGCACAGCTCTGGACAGATCAGGTGAGTTTCTTCATCTATAAATGAGAGGGTTAGAC
TAGCTGATCTCTAAAGCTCCTTTTATTTTTAGAAGTAGATGATCTGTGCCTCCTGAAATT
ATAGTGATTCACATTGAGCTCTGAACCTAGCGTTTCTGCAGAATAGTTTTCGATTTACAT
TTTCTCCAATTTCAGTATTAATTGGGTGACTAGGATCAGGAATGAGATGGATCTGAAGGA
GAATCAGTATTTGAGTGTAATCTGCTCAGTGCTGGTGTCTGAATAGAGATGGTGCTGGGG
AAGCATACAGATTCCAGATAGAAATGACCCTGTCTGGCATCATCTTTTGTGTCTCTACAG
AGAGTAATTATTTTTAATGGCTCTTTGTGTTGTGCCTTGCTTTCTCTTAAGATGATGAGA
ACAGGCTAGTCAAACGGTGCTGTCTTTCCCCCTTGGGTGAATGGACTGAAGAAGTCATGC
TAACTCTTCTCAGTAGTTGTCTTCCACCTTCATGCTGCGATATCAGGGGAGGGAATTTTA
TTAGTCAGTTTCCTGAAACCTTCTCCCCTATTTAACAGTTGAAATCATTCTTCTGAGCTG
GTGAATAGTCTACTTTTGTTGAGCATATTCCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAACTCCTGCTTCTCTTTTTTAAATGAGAAAAACTTAGGAGAGGTTGATAAGAAAGGC
TGAAGACAGGTTATCCGAGATGTTTCTGCAAAAGTTGGTTATCTTTAATGTGGTCCGAAA
GAAATGGAGGAGAGTGCAGATTGGGAGTCCTGGCTTATCTAGCGAGGGTGACCCTGGACC
AGTGCTGTTCAGTAGAACTTGGTGTTGGGGAGATGGAATTTTGTGCCAGCCACTGCAGTG
CTAGCTACATGTAGTTATTGAACATTTGAAATATGGCTAAGTGACGGAGGCACTGAATTT
TAAATTTTATTCATTTAGCTAAGTTTAAATGGTTACCTGTGGCTAGTGGCTGTGGTGTTG
AACAGCACAGCTCTGGACAGATCAGGTGAGTTTCTTCATCTATAAATGAGAGGGTTAGAC
TAGCTGATCTCTAAAGCTCCTTTTATTTTTAGAAGTAGATGATCTGTGCCTCCTGAAATT
ATAGTGATTCACATTGAGCTCTGAACCTAGCGTTTCTGCAGAATAGTTTTCGATTTACAT
TTTCTCCAATTTCAGTATTAATTGGGTGACTAGGATCAGGAATGAGATGGATCTGAAGGA
GAATCAGTATTTGAGTGTAATCTGCTCAGTGCTGGTGTCTGAATAGAGATGGTGCTGGGG
AAGCATACAGATTCCAGATAGAAATGACCCTGTCTGGCATCATCTTTTGTGTCTCTACAG
AGAGTAATTATTTTTAATGGCTCTTTGTGTTGTGCCTTGCTTTCTCTTAAGATGATGAGA
ACAGGCTAGTCAAACGGTGCTGTCTTTCCCCCTTGGGTGAATGGACTGAAGAAGTCATGC
TAACTCTTCTCAGTAGTTGTCTTCCACCTTCATGCTGCGATATCAGGGGAGGGAATTTTA
TTAGTCAGTTTCCTGAAACCTTCTCCCCTATTTAACAGTTGAAATCATTCTTCTGAGCTG
GTGAATAGTCTACTTTTGTTGAGCATATTCCAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               80-294, gnl|bosTau2|chr10 (14447097-14447320)
               

               
               80-294, gnl|Hg17|chr14 (22106612-22106404)
               

               
               80-294, gnl|Mm7|chr14 (49107490-49107279)
               


               
               539-994, gnl|bosTau2|chr10 (14447609-14448057)
               

               
               539-994, gnl|Hg17|chr14 (22106132-22105686)
               

               
               539-994, gnl|Mm7|chr14 (49106816-49106387)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               80-294, gnl|bosTau2|chr10 (14447097-14447320)
               

               
               80-294, gnl|Hg17|chr14 (22106612-22106404)
               

               
               80-294, gnl|Mm7|chr14 (49107490-49107279)
               


               
               539-994, gnl|bosTau2|chr10 (14447609-14448057)
               

               
               539-994, gnl|Hg17|chr14 (22106132-22105686)
               

               
               539-994, gnl|Mm7|chr14 (49106816-49106387)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               sme (0.305437)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               jca (0.11396)

	80-294, gnl\|bosTau2\|chr10 (14447097-14447320)
	80-294, gnl\|Hg17\|chr14 (22106612-22106404)
	80-294, gnl\|Mm7\|chr14 (49107490-49107279)

	539-994, gnl\|bosTau2\|chr10 (14447609-14448057)
	539-994, gnl\|Hg17\|chr14 (22106132-22105686)
	539-994, gnl\|Mm7\|chr14 (49106816-49106387)