Non-Coding RNA Search

Ss1.1-Pig4-TMW8056K10.5

Sequence:


               
               GCACACAATTTATTTCCATCGCTCTACGTCTGAGGCTGATTCTCACCAACGGCACAATCC
TTGATCGGCAGTCTGCTTGGGCTCAGGATCCGGTCAGGACCCAGGCCGCAATGGGTTTCA
TCTAGCGACTTCCGAGGGCGCCAGGGGATCGGCTTGGCTCAGGGCGAGCTGGTCTTTCTT
CTCCTTCTGCAGGACCTGCTCCTCCCACAGCGCCTGATCCACCTGATCGTCGGTGAGCAC
TACAGGCTTGTACTTCTCATCGAAGAGCCGCTCGTTGGCTTCCGAGTGCAGCTGGTGGGG
CTCCACGACGCGTAGATGTGCCGGCAGGTGCAGGAACTCGTCGTCGTTGATGTCGCAGTC
GCGCATCCGGGCCCCCAGCACCCACCAGCGGCCCACGAAGCCCACATCCAAGATCCGGTC
CGGGAAGTCCGCCCAGCGGGGCTGCAGGTAGCGGCAGCGGGCCTGGTAGAGGCTGACCTG
GGCGTCGAACGGCGCCTCGTACACAAGCGAGCAGAGGCCCAGGCTCACGTGGCGCAGGCG
GCCGCGACCCCGCAGCCAGAGCAGCCGCTGCACAAATGCTTCAGAATCGCGGTTGCGTGT
GGCCGGCGCCAACAGCAGGAGCGTCCCCGACGCATCCAGCAGCGCCTCCTCAAAGGCTGC
CTCACTCGGCGCCAGGGCGCAGCAGGCCGCCGCGCCGCCCAGCAGCCCCACGTACACGGC
TGCACGCCCGGGCCGGGCTCGCGCTGCCGCCGCCGCGTCTCTGCAGGCCTCTGCGTAGTC
CTGGAGCAGCGCGCGGGCCCAAGCTCCTGAGAGGAGAGAAGCGCGATGAGGGCGGTCGGG
CCGCTGCGGCCCCCCACCCCCACCGCCTAGCGCCTCTACTCACCCAACCGCGCCCACACG
CCAGGCTTTGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACACAATTTATTTCCATCGCTCTACGTCTGAGGCTGATTCTCACCAACGGCACAATCC
TTGATCGGCAGTCTGCTTGGGCTCAGGATCCGGTCAGGACCCAGGCCGCAATGGGTTTCA
TCTAGCGACTTCCGAGGGCGCCAGGGGATCGGCTTGGCTCAGGGCGAGCTGGTCTTTCTT
CTCCTTCTGCAGGACCTGCTCCTCCCACAGCGCCTGATCCACCTGATCGTCGGTGAGCAC
TACAGGCTTGTACTTCTCATCGAAGAGCCGCTCGTTGGCTTCCGAGTGCAGCTGGTGGGG
CTCCACGACGCGTAGATGTGCCGGCAGGTGCAGGAACTCGTCGTCGTTGATGTCGCAGTC
GCGCATCCGGGCCCCCAGCACCCACCAGCGGCCCACGAAGCCCACATCCAAGATCCGGTC
CGGGAAGTCCGCCCAGCGGGGCTGCAGGTAGCGGCAGCGGGCCTGGTAGAGGCTGACCTG
GGCGTCGAACGGCGCCTCGTACACAAGCGAGCAGAGGCCCAGGCTCACGTGGCGCAGGCG
GCCGCGACCCCGCAGCCAGAGCAGCCGCTGCACAAATGCTTCAGAATCGCGGTTGCGTGT
GGCCGGCGCCAACAGCAGGAGCGTCCCCGACGCATCCAGCAGCGCCTCCTCAAAGGCTGC
CTCACTCGGCGCCAGGGCGCAGCAGGCCGCCGCGCCGCCCAGCAGCCCCACGTACACGGC
TGCACGCCCGGGCCGGGCTCGCGCTGCCGCCGCCGCGTCTCTGCAGGCCTCTGCGTAGTC
CTGGAGCAGCGCGCGGGCCCAAGCTCCTGAGAGGAGAGAAGCGCGATGAGGGCGGTCGGG
CCGCTGCGGCCCCCCACCCCCACCGCCTAGCGCCTCTACTCACCCAACCGCGCCCACACG
CCAGGCTTTGCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61821647|ref|XP_584795.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61821647|ref|XP_584795.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               441-560, + strand, RNAz p=0.826107

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               441-560, + strand, RNAz p=0.826107

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-911, gnl|bosTau2|chr7 (10032461-10031554)
               

               
               1-911, gnl|Hg17|chr19 (10901474-10900565)
               

               
               1-911, gnl|Mm7|chr9 (21471620-21470739)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-911, gnl|bosTau2|chr7 (10032461-10031554)
               

               
               1-911, gnl|Hg17|chr19 (10901474-10900565)
               

               
               1-911, gnl|Mm7|chr9 (21471620-21470739)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	1-911, gnl\|bosTau2\|chr7 (10032461-10031554)
	1-911, gnl\|Hg17\|chr19 (10901474-10900565)
	1-911, gnl\|Mm7\|chr9 (21471620-21470739)