Non-Coding RNA Search

Ss1.1-Pig4-TMW8056K11.3

Sequence:


               
               CTTCTGGTTCCCTAATTTGGCTTCCTAAATAAATTGATAGATTTTTCCCTATGTTTAAAG
ATTCTGGAAGTAGTTTTGTCTATTTTTAGTCCATAGATGCCCTCCTAGTCATTAGTCATG
TCTCAACATAACCATCTTTCTAACCAAACCTCTAAAACATTTTTCACTTCAGTAGTGAGT
ACAAAGAGAGCTTATTAAGGAAAATCCTATTTAGAAGGGCAATTTGATATTAAAAGCATC
CTGATATAAAGTCTAGAATTTGGGAATATAAAGAGGACAGGCACCAAACTGCTAATGTCA
AGCATTTGTTAGGCTGATACTTTTAATGCATCTTGCCTCTTGACAGCTACAGAGAAATGG
ACTATCAAATCGTTAATACAGATGACCCAGACCTGATACCAGATCTTCATGATCAGAAGT
AATTAAATGAAATTATAATTCTCATCTCCTCCCCTAAACCTGCCTAGCCCCACAAAATTC
CCCAACTCAATTAACTTTTTTCACTTCAGGTTATATTTAAATGACTAGAGATACAAATTT
TAAAGTGAAGCAAATTCTTAAATGAGAGCGTCAGTCTAGCTCTCTAAAAGTATAAAAACC
AGTGCACATCTCTACCTGACTTAGTTTTTCTTTCCATTTGAACAATTCGGCATGAATTGA
AACCAGGTTTTCCTGTGGAAAGTTTCAGCTTGATTGGGTTGGGGGGGTAGGGTGTAGAAG
TTGAGTTGAGTTCTTTCTAGTAACTCTTGGTCAGTGTTTATTTTTATATTATATCTCAAT
AGGATGAGGATGTCTTCAGTTTGAATCTGCATAATGTTTACTGCAAAACCGCTTTTCATT
TAATGCATATGGCCTTCACATTTCTGTATAATAAAGATCAATTATTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCTGGTTCCCTAATTTGGCTTCCTAAATAAATTGATAGATTTTTCCCTATGTTTAAAG
ATTCTGGAAGTAGTTTTGTCTATTTTTAGTCCATAGATGCCCTCCTAGTCATTAGTCATG
TCTCAACATAACCATCTTTCTAACCAAACCTCTAAAACATTTTTCACTTCAGTAGTGAGT
ACAAAGAGAGCTTATTAAGGAAAATCCTATTTAGAAGGGCAATTTGATATTAAAAGCATC
CTGATATAAAGTCTAGAATTTGGGAATATAAAGAGGACAGGCACCAAACTGCTAATGTCA
AGCATTTGTTAGGCTGATACTTTTAATGCATCTTGCCTCTTGACAGCTACAGAGAAATGG
ACTATCAAATCGTTAATACAGATGACCCAGACCTGATACCAGATCTTCATGATCAGAAGT
AATTAAATGAAATTATAATTCTCATCTCCTCCCCTAAACCTGCCTAGCCCCACAAAATTC
CCCAACTCAATTAACTTTTTTCACTTCAGGTTATATTTAAATGACTAGAGATACAAATTT
TAAAGTGAAGCAAATTCTTAAATGAGAGCGTCAGTCTAGCTCTCTAAAAGTATAAAAACC
AGTGCACATCTCTACCTGACTTAGTTTTTCTTTCCATTTGAACAATTCGGCATGAATTGA
AACCAGGTTTTCCTGTGGAAAGTTTCAGCTTGATTGGGTTGGGGGGGTAGGGTGTAGAAG
TTGAGTTGAGTTCTTTCTAGTAACTCTTGGTCAGTGTTTATTTTTATATTATATCTCAAT
AGGATGAGGATGTCTTCAGTTTGAATCTGCATAATGTTTACTGCAAAACCGCTTTTCATT
TAATGCATATGGCCTTCACATTTCTGTATAATAAAGATCAATTATTGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               616-735, + strand, RNAz p=0.508057

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               616-735, + strand, RNAz p=0.508057

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_018178, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_018178, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               52-888, gnl|bosTau2|chr3 (16901259-16902088)
               

               
               52-888, gnl|Hg17|chr1 (147432620-147431782)
               

               
               52-888, gnl|Mm7|chr3 (95492446-95493190)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               52-888, gnl|bosTau2|chr3 (16901259-16902088)
               

               
               52-888, gnl|Hg17|chr1 (147432620-147431782)
               

               
               52-888, gnl|Mm7|chr3 (95492446-95493190)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	52-888, gnl\|bosTau2\|chr3 (16901259-16902088)
	52-888, gnl\|Hg17\|chr1 (147432620-147431782)
	52-888, gnl\|Mm7\|chr3 (95492446-95493190)

	fhi (0.169578)
	csp (0.161186)
	lun (0.150489)
	ski (0.146735)
	pty (0.142714)
	lnt (0.142308)
	csk (0.140746)
	ute (0.132784)
	ese (0.126502)
	spc (0.113366)
	ldo (0.0970026)