Non-Coding RNA Search

Ss1.1-Pig4-TMW8056K20.5

Sequence:


               
               GCTGCGCCGGGAGTGGAGGCGGAGCCGAGGGAGTGCTAGGCCCTACGCCCTTTCGGCCCT
TGGAGAGGATCTGACGGGTCCGAAGGAAACTCACGGTCCTAGCCAACAAATGCTTATTGC
CTTTTCTTGCCGTGGTCATGGGAATGTCCTGATAGAGTCTTTGATCTGTTAGGCAAACCA
GCTTTTCGTAGCCCTGAATTGGAACTTCCCCGAGGACTGCTGAGTAAGCGCCGCCTCTGC
GTTCCGACCGAGGCACGAGGCCAGTCAAGCAGGTCCCTGTGTCCCGACAGGTGCGACGCT
GAGCACTCCATGCCTGCGGGCGCGGGGAGGCGTGGCCTCCCCCAGGGCCACCACCTCTGC
TGGTTGCTCTGCGCTTTCACTTTAAAGCTCTGCCAAGCAGAAGCTCCCGTGCGCGAGGAG
AAACTTTCAGTGAGCACCTCAAATTTGCGGTGCTGGCTGGTGGAAGAGTTTGTGGTGGCA
GAAGAGTGTGCTCCATGTTCTAATTTCCAGGCTAAAACTACCCCTGAGTGCAGTTCCACA
GGGTATGTGGAGAAAATCACATGCAGCTCATCTAAGAGGAATGAGTTCAAGAGCTGCCGC
TCAGCTCTGATGGAACAACACTTATTCTGGAAATTCGAAGGGGCTGTTGTAGGTGTGGCC
TTGGTCTTTGCTTGCCTGGTCATCGTGCGTCAGCGACAACTGGACAGAAAGGCTCTGGAA
AAGGTCCGGAAGCAAATTGAGTCCATATAACTAACTTCTCCCCTTTTATCGGGGTCTTAG
AGACCCTACCTCAGAGAAAGGGGAATGGACTGACTCGTGCCCCTGGTTCTCTGGAACCCT
GTGGTGGCACACCCTTCGCCCTTTCTCCTCAGCGAAATCAGTAAATGAATAGAATAAAAA
GAGTAAAATCAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGCGCCGGGAGTGGAGGCGGAGCCGAGGGAGTGCTAGGCCCTACGCCCTTTCGGCCCT
TGGAGAGGATCTGACGGGTCCGAAGGAAACTCACGGTCCTAGCCAACAAATGCTTATTGC
CTTTTCTTGCCGTGGTCATGGGAATGTCCTGATAGAGTCTTTGATCTGTTAGGCAAACCA
GCTTTTCGTAGCCCTGAATTGGAACTTCCCCGAGGACTGCTGAGTAAGCGCCGCCTCTGC
GTTCCGACCGAGGCACGAGGCCAGTCAAGCAGGTCCCTGTGTCCCGACAGGTGCGACGCT
GAGCACTCCATGCCTGCGGGCGCGGGGAGGCGTGGCCTCCCCCAGGGCCACCACCTCTGC
TGGTTGCTCTGCGCTTTCACTTTAAAGCTCTGCCAAGCAGAAGCTCCCGTGCGCGAGGAG
AAACTTTCAGTGAGCACCTCAAATTTGCGGTGCTGGCTGGTGGAAGAGTTTGTGGTGGCA
GAAGAGTGTGCTCCATGTTCTAATTTCCAGGCTAAAACTACCCCTGAGTGCAGTTCCACA
GGGTATGTGGAGAAAATCACATGCAGCTCATCTAAGAGGAATGAGTTCAAGAGCTGCCGC
TCAGCTCTGATGGAACAACACTTATTCTGGAAATTCGAAGGGGCTGTTGTAGGTGTGGCC
TTGGTCTTTGCTTGCCTGGTCATCGTGCGTCAGCGACAACTGGACAGAAAGGCTCTGGAA
AAGGTCCGGAAGCAAATTGAGTCCATATAACTAACTTCTCCCCTTTTATCGGGGTCTTAG
AGACCCTACCTCAGAGAAAGGGGAATGGACTGACTCGTGCCCCTGGTTCTCTGGAACCCT
GTGGTGGCACACCCTTCGCCCTTTCTCCTCAGCGAAATCAGTAAATGAATAGAATAAAAA
GAGTAAAATCAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61832775|ref|XP_591741.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61832775|ref|XP_591741.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               288-405, + strand, RNAz p=0.523332

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               288-405, + strand, RNAz p=0.523332

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC004239, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC004239, +

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-405, gnl|bosTau2|chr3 (8156917-8156511)
               

               
               1-405, gnl|dasNov1|scaffold_83165 (6288-6603)
               

               
               1-405, gnl|echTel1|scaffold_307301 (9780-9466)
               

               
               1-405, gnl|hg17|chr1 (150762690-150763027)
               

               
               1-405, gnl|Hg17|chr1 (150763116-150762706)
               

               
               1-405, gnl|loxAfr1|scaffold_37285 (12192-12526)
               

               
               1-405, gnl|mm7|chr3 (90362804-90362527)
               

               
               1-405, gnl|Mm7|chr3 (90362443-90362788)
               

               
               1-405, gnl|monDom2|scaffold_59 (4099782-4099372)
               

               
               1-405, gnl|oryCun1|scaffold_105180 (4626-4321)
               

               
               1-405, gnl|panTro1|chr1 (132743427-132743764)
               

               
               1-405, gnl|rheMac2|chr1 (132492747-132493085)
               

               
               1-405, gnl|rn3|chr2 (182421550-182421272)
               


               
               592-911, gnl|bosTau2|chr3 (8155145-8154820)
               

               
               592-911, gnl|Hg17|chr1 (150760386-150760062)
               

               
               592-911, gnl|Mm7|chr3 (90366116-90366425)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-405, gnl|bosTau2|chr3 (8156917-8156511)
               

               
               1-405, gnl|dasNov1|scaffold_83165 (6288-6603)
               

               
               1-405, gnl|echTel1|scaffold_307301 (9780-9466)
               

               
               1-405, gnl|hg17|chr1 (150762690-150763027)
               

               
               1-405, gnl|Hg17|chr1 (150763116-150762706)
               

               
               1-405, gnl|loxAfr1|scaffold_37285 (12192-12526)
               

               
               1-405, gnl|mm7|chr3 (90362804-90362527)
               

               
               1-405, gnl|Mm7|chr3 (90362443-90362788)
               

               
               1-405, gnl|monDom2|scaffold_59 (4099782-4099372)
               

               
               1-405, gnl|oryCun1|scaffold_105180 (4626-4321)
               

               
               1-405, gnl|panTro1|chr1 (132743427-132743764)
               

               
               1-405, gnl|rheMac2|chr1 (132492747-132493085)
               

               
               1-405, gnl|rn3|chr2 (182421550-182421272)
               


               
               592-911, gnl|bosTau2|chr3 (8155145-8154820)
               

               
               592-911, gnl|Hg17|chr1 (150760386-150760062)
               

               
               592-911, gnl|Mm7|chr3 (90366116-90366425)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               cli (0.305623)
               

               
               cga (0.279096)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.305623)
               

               
               cga (0.279096)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

	1-405, gnl\|bosTau2\|chr3 (8156917-8156511)
	1-405, gnl\|dasNov1\|scaffold_83165 (6288-6603)
	1-405, gnl\|echTel1\|scaffold_307301 (9780-9466)
	1-405, gnl\|hg17\|chr1 (150762690-150763027)
	1-405, gnl\|Hg17\|chr1 (150763116-150762706)
	1-405, gnl\|loxAfr1\|scaffold_37285 (12192-12526)
	1-405, gnl\|mm7\|chr3 (90362804-90362527)
	1-405, gnl\|Mm7\|chr3 (90362443-90362788)
	1-405, gnl\|monDom2\|scaffold_59 (4099782-4099372)
	1-405, gnl\|oryCun1\|scaffold_105180 (4626-4321)
	1-405, gnl\|panTro1\|chr1 (132743427-132743764)
	1-405, gnl\|rheMac2\|chr1 (132492747-132493085)
	1-405, gnl\|rn3\|chr2 (182421550-182421272)

	592-911, gnl\|bosTau2\|chr3 (8155145-8154820)
	592-911, gnl\|Hg17\|chr1 (150760386-150760062)
	592-911, gnl\|Mm7\|chr3 (90366116-90366425)

	cli (0.305623)
	cga (0.279096)
	mas (0.210305)
	tes (0.207814)
	col (0.195008)
	nlu (0.191681)
	fty (0.17584)
	ton (0.1755)
	fhi (0.169578)
	hyp (0.142837)
	pty (0.142714)
	ssp (0.13552)
	nmm (0.132802)
	ute (0.132784)
	cov (0.132153)
	bla (0.124347)
	eep (0.122564)
	med (0.116252)
	ecc (0.115035)