Ss1.1-Pig4-TMW8056L06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGCACGGGGCGAAGATGGCGGCGGAGCGACAGGACGCGCTGAGGGAGTTCGTGGCGGTG ACGGGCGCGGAGGAGGACCGAGCCCGCTTCTTCCTCGAGTCGGCCGGCTGGGACCTGCAG ATCGCCCTAGCGAGCTTTTATGAGGATGGAGGGGATGAAGACATTGTGACCATTTCTCAG GCAACTCCCAGTTCAGTGTCCAGAGGCACAGCCCCCAGTGATAATAGGGTGACATCCTTC AGAGACCTCATTCATGACCAAGACGAGGACGAGGAGGAAGAGGAGGGTCAGAGGTTTTAT GCTGGGGGCTCAGAGAGAAGTGGACAGCAGATTGTTGGCCCTCCCAGGAAGAAAAGTCCC AACGAGCTGGTGGACGATCTTTTTAAAGGTGCCAAGGAGCATGGAGCTGTAGCTGTGGAG CGAGTGACCAAGAGCCCTGGAGAGACCAGTAAACCAAGACCATTCGCAGGGGGTGGCTAC CGCCTTGGAGCTGCACCAGAGGAAGAGTCTGCTTATGTGGCAGGCGAACGGAGACGGCAT TCTGGCCAAGATGTTCATGTAGTGTTGAAGCTCTGGAAAAGTGGATTCAGCCTGGACAAT GGTGAACTCAGAAGCTACCAAGACCCATCCAATGCCCAGTTTCTGGAGTCTATCCGCAGA GGAGAGGTGCCAGCAGAGCTACGAAGGTTAGCTCATGGTGGGCAGGTGAACTTGGACATG GAGGATCATCGGGACGAGGACTTCGTGAAGCCCAAGGGAGCCTTCAAAGCCTTCACTGGC GAGGGTCAGAAACTGGGCAGCACTGCCCCCCAGGTGTTGAATACCAGCTCTCCAGCCCAA CAAGCAGAAAACGAAGCCAAAGCCAGCTCTTCCATCTCAATCGACGAGTCACAGCCTACC ACGAACATCCAAATACGGCTTGCCGACGGCGGGAGGCTGGTGCAGAAATTTAACCACAGC CACAGGATCAGCGACATCCGACTCTTCATCGTGGACGCCCGGCCAGCCATGGCTGCCACC AGCTTTGTCCTCATGACTACCTTCCCGAACAAAGAGCTGGCCGATGAGAGCCAGACCCTG AAGGAAGCCAACCTGCTCAACGCCGTCATCGTGCAGCGGTTAACATAACCGCCCGGCCCG GCCAGCGGCCTCATCTCCCTCCTGTGTCTCCCACGGCCAGCTCCCCGTGGAGGCCGCCCC TCCACCCCTTCCCAGGCACCCAGCAGTCCAGTGCCACGTCTCCTCCGTAGCTCTGGGTTC TTAGTTCTCAGTTGGACATTTGTTTTCTCCTTAGTTGCATTTCCTGGGTTTTTGTGACGA TCAATGGACTTTAAAGAAAAAAATAAAAACAACCAAAAAAACTGAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGCACGGGGCGAAGATGGCGGCGGAGCGACAGGACGCGCTGAGGGAGTTCGTGGCGGTG ACGGGCGCGGAGGAGGACCGAGCCCGCTTCTTCCTCGAGTCGGCCGGCTGGGACCTGCAG ATCGCCCTAGCGAGCTTTTATGAGGATGGAGGGGATGAAGACATTGTGACCATTTCTCAG GCAACTCCCAGTTCAGTGTCCAGAGGCACAGCCCCCAGTGATAATAGGGTGACATCCTTC AGAGACCTCATTCATGACCAAGACGAGGACGAGGAGGAAGAGGAGGGTCAGAGGTTTTAT GCTGGGGGCTCAGAGAGAAGTGGACAGCAGATTGTTGGCCCTCCCAGGAAGAAAAGTCCC AACGAGCTGGTGGACGATCTTTTTAAAGGTGCCAAGGAGCATGGAGCTGTAGCTGTGGAG CGAGTGACCAAGAGCCCTGGAGAGACCAGTAAACCAAGACCATTCGCAGGGGGTGGCTAC CGCCTTGGAGCTGCACCAGAGGAAGAGTCTGCTTATGTGGCAGGCGAACGGAGACGGCAT TCTGGCCAAGATGTTCATGTAGTGTTGAAGCTCTGGAAAAGTGGATTCAGCCTGGACAAT GGTGAACTCAGAAGCTACCAAGACCCATCCAATGCCCAGTTTCTGGAGTCTATCCGCAGA GGAGAGGTGCCAGCAGAGCTACGAAGGTTAGCTCATGGTGGGCAGGTGAACTTGGACATG GAGGATCATCGGGACGAGGACTTCGTGAAGCCCAAGGGAGCCTTCAAAGCCTTCACTGGC GAGGGTCAGAAACTGGGCAGCACTGCCCCCCAGGTGTTGAATACCAGCTCTCCAGCCCAA CAAGCAGAAAACGAAGCCAAAGCCAGCTCTTCCATCTCAATCGACGAGTCACAGCCTACC ACGAACATCCAAATACGGCTTGCCGACGGCGGGAGGCTGGTGCAGAAATTTAACCACAGC CACAGGATCAGCGACATCCGACTCTTCATCGTGGACGCCCGGCCAGCCATGGCTGCCACC AGCTTTGTCCTCATGACTACCTTCCCGAACAAAGAGCTGGCCGATGAGAGCCAGACCCTG AAGGAAGCCAACCTGCTCAACGCCGTCATCGTGCAGCGGTTAACATAACCGCCCGGCCCG GCCAGCGGCCTCATCTCCCTCCTGTGTCTCCCACGGCCAGCTCCCCGTGGAGGCCGCCCC TCCACCCCTTCCCAGGCACCCAGCAGTCCAGTGCCACGTCTCCTCCGTAGCTCTGGGTTC TTAGTTCTCAGTTGGACATTTGTTTTCTCCTTAGTTGCATTTCCTGGGTTTTTGTGACGA TCAATGGACTTTAAAGAAAAAAATAAAAACAACCAAAAAAACTGAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 292-450, + strand, RNAz p=0.935507 | |
| 662-800, + strand, RNAz p=0.822214 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 292-450, + strand, RNAz p=0.935507 | |
| 662-800, + strand, RNAz p=0.822214 |
| Homologous human UTR: 2 entry(ies) | More info |
| Homologous human UTR: 2 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC002801, + | |
| 3' of BC002801, + |
| Aligned organism(s): 66 entry(ies) | More info |
| Aligned organism(s): 66 entry(ies) | Help | Less info |
| 1-125, gnl|bosTau2|chr13 (41209677-41209801) | |
| 1-125, gnl|danRer3|chr19 (12266433-12266337) | |
| 1-125, gnl|echTel1|scaffold_305716 (238816-238935) | |
| 1-125, gnl|Hg17|chr20 (1395484-1395360) | |
| 1-125, gnl|hg17|chr8 (48587158-48587282) | |
| 1-125, gnl|loxAfr1|scaffold_161739 (4946-4839) | |
| 1-125, gnl|mm7|chr2 (151235268-151235146) | |
| 1-125, gnl|Mm7|chr2 (151235150-151235274) | |
| 1-125, gnl|oryCun1|scaffold_192672 (10995-11117) | |
| 1-125, gnl|panTro1|chr7 (50149577-50149701) | |
| 1-125, gnl|rheMac2|chr8 (50017457-50017581) | |
| 1-125, gnl|rn3|chr17 (65712154-65712043) | |
| 1-125, gnl|tetNig1|chrUn_random (84315909-84316000) | |
| 292-472, gnl|bosTau2|chr13 (41220840-41221020) | |
| 292-472, gnl|canFam2|chr24 (22557020-22556857) | |
| 292-472, gnl|danRer3|chr19 (12269858-12269693) | |
| 292-472, gnl|dasNov1|scaffold_61382 (7728-7891) | |
| 292-472, gnl|echTel1|scaffold_305716 (230374-230537) | |
| 292-472, gnl|fr1|chrUn (190126620-190126776) | |
| 292-472, gnl|galGal2|chr20 (9447092-9446929) | |
| 292-472, gnl|Hg17|chr20 (1383779-1383599) | |
| 292-472, gnl|hg17|chr8 (48586817-48586980) | |
| 292-472, gnl|Mm7|chr2 (151243869-151244049) | |
| 292-472, gnl|mm7|chr5 (48878388-48878225) | |
| 292-472, gnl|monDom2|scaffold_38 (3888984-3889147) | |
| 292-472, gnl|oryCun1|scaffold_83871 (3740-3578) | |
| 292-472, gnl|panTro1|chr7 (50149239-50149402) | |
| 292-472, gnl|rheMac2|chr8 (50017124-50017277) | |
| 292-472, gnl|rn3|chr17 (65712560-65712397) | |
| 292-472, gnl|tetNig1|chrUn_random (84314567-84314726) | |
| 662-800, gnl|bosTau2|chr13 (41223499-41223637) | |
| 662-800, gnl|canFam2|chr24 (22559807-22559668) | |
| 662-800, gnl|canFam2|chr24 (22559819-22559655) | |
| 662-800, gnl|danRer3|chr19 (12271039-12270900) | |
| 662-800, gnl|danRer3|chr19 (12271044-12270889) | |
| 662-800, gnl|dasNov1|scaffold_61382 (5164-5303) | |
| 662-800, gnl|dasNov1|scaffold_61382 (5151-5316) | |
| 662-800, gnl|echTel1|scaffold_305716 (227678-227814) | |
| 662-800, gnl|echTel1|scaffold_305716 (227672-227828) | |
| 662-800, gnl|fr1|chrUn (190125982-190126121) | |
| 662-800, gnl|fr1|chrUn (190125969-190126130) | |
| 662-800, gnl|galGal2|chr20 (9448904-9448767) | |
| 662-800, gnl|galGal2|chr20 (9448911-9448754) | |
| 662-800, gnl|hg17|chr20 (1381126-1381291) | |
| 662-800, gnl|Hg17|chr20 (1381276-1381138) | |
| 662-800, gnl|hg17|chr8 (48586476-48586615) | |
| 662-800, gnl|loxAfr1|scaffold_83679 (34238-34377) | |
| 662-800, gnl|loxAfr1|scaffold_83679 (34225-34390) | |
| 662-800, gnl|mm7|chr2 (151247253-151247092) | |
| 662-800, gnl|Mm7|chr2 (151247103-151247241) | |
| 662-800, gnl|mm7|chr5 (48878729-48878590) | |
| 662-800, gnl|monDom2|scaffold_38 (3881013-3881150) | |
| 662-800, gnl|monDom2|scaffold_38 (3880993-3881162) | |
| 662-800, gnl|oryCun1|scaffold_176589 (81931-82068) | |
| 662-800, gnl|oryCun1|scaffold_212446 (9651-9806) | |
| 662-800, gnl|panTro1|chr21 (1412988-1413153) | |
| 662-800, gnl|panTro1|chr7 (50148897-50149037) | |
| 662-800, gnl|rheMac2|chr10 (34715961-34716126) | |
| 662-800, gnl|rheMac2|chr8 (50016792-50016922) | |
| 662-800, gnl|rn3|chr17 (65712894-65712755) | |
| 662-800, gnl|rn3|chr3 (141718393-141718232) | |
| 662-800, gnl|tetNig1|chrUn_random (84313525-84313664) | |
| 662-800, gnl|tetNig1|chrUn_random (84313518-84313677) | |
| 954-1369, gnl|bosTau2|chr13 (41229685-41230100) | |
| 954-1369, gnl|Hg17|chr20 (1372568-1372156) | |
| 954-1369, gnl|Mm7|chr2 (151251752-151252153) |
| Aligned organism(s): 66 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-125, gnl|bosTau2|chr13 (41209677-41209801) | |
| 1-125, gnl|danRer3|chr19 (12266433-12266337) | |
| 1-125, gnl|echTel1|scaffold_305716 (238816-238935) | |
| 1-125, gnl|Hg17|chr20 (1395484-1395360) | |
| 1-125, gnl|hg17|chr8 (48587158-48587282) | |
| 1-125, gnl|loxAfr1|scaffold_161739 (4946-4839) | |
| 1-125, gnl|mm7|chr2 (151235268-151235146) | |
| 1-125, gnl|Mm7|chr2 (151235150-151235274) | |
| 1-125, gnl|oryCun1|scaffold_192672 (10995-11117) | |
| 1-125, gnl|panTro1|chr7 (50149577-50149701) | |
| 1-125, gnl|rheMac2|chr8 (50017457-50017581) | |
| 1-125, gnl|rn3|chr17 (65712154-65712043) | |
| 1-125, gnl|tetNig1|chrUn_random (84315909-84316000) | |
| 292-472, gnl|bosTau2|chr13 (41220840-41221020) | |
| 292-472, gnl|canFam2|chr24 (22557020-22556857) | |
| 292-472, gnl|danRer3|chr19 (12269858-12269693) | |
| 292-472, gnl|dasNov1|scaffold_61382 (7728-7891) | |
| 292-472, gnl|echTel1|scaffold_305716 (230374-230537) | |
| 292-472, gnl|fr1|chrUn (190126620-190126776) | |
| 292-472, gnl|galGal2|chr20 (9447092-9446929) | |
| 292-472, gnl|Hg17|chr20 (1383779-1383599) | |
| 292-472, gnl|hg17|chr8 (48586817-48586980) | |
| 292-472, gnl|Mm7|chr2 (151243869-151244049) | |
| 292-472, gnl|mm7|chr5 (48878388-48878225) | |
| 292-472, gnl|monDom2|scaffold_38 (3888984-3889147) | |
| 292-472, gnl|oryCun1|scaffold_83871 (3740-3578) | |
| 292-472, gnl|panTro1|chr7 (50149239-50149402) | |
| 292-472, gnl|rheMac2|chr8 (50017124-50017277) | |
| 292-472, gnl|rn3|chr17 (65712560-65712397) | |
| 292-472, gnl|tetNig1|chrUn_random (84314567-84314726) | |
| 662-800, gnl|bosTau2|chr13 (41223499-41223637) | |
| 662-800, gnl|canFam2|chr24 (22559807-22559668) | |
| 662-800, gnl|canFam2|chr24 (22559819-22559655) | |
| 662-800, gnl|danRer3|chr19 (12271039-12270900) | |
| 662-800, gnl|danRer3|chr19 (12271044-12270889) | |
| 662-800, gnl|dasNov1|scaffold_61382 (5164-5303) | |
| 662-800, gnl|dasNov1|scaffold_61382 (5151-5316) | |
| 662-800, gnl|echTel1|scaffold_305716 (227678-227814) | |
| 662-800, gnl|echTel1|scaffold_305716 (227672-227828) | |
| 662-800, gnl|fr1|chrUn (190125982-190126121) | |
| 662-800, gnl|fr1|chrUn (190125969-190126130) | |
| 662-800, gnl|galGal2|chr20 (9448904-9448767) | |
| 662-800, gnl|galGal2|chr20 (9448911-9448754) | |
| 662-800, gnl|hg17|chr20 (1381126-1381291) | |
| 662-800, gnl|Hg17|chr20 (1381276-1381138) | |
| 662-800, gnl|hg17|chr8 (48586476-48586615) | |
| 662-800, gnl|loxAfr1|scaffold_83679 (34238-34377) | |
| 662-800, gnl|loxAfr1|scaffold_83679 (34225-34390) | |
| 662-800, gnl|mm7|chr2 (151247253-151247092) | |
| 662-800, gnl|Mm7|chr2 (151247103-151247241) | |
| 662-800, gnl|mm7|chr5 (48878729-48878590) | |
| 662-800, gnl|monDom2|scaffold_38 (3881013-3881150) | |
| 662-800, gnl|monDom2|scaffold_38 (3880993-3881162) | |
| 662-800, gnl|oryCun1|scaffold_176589 (81931-82068) | |
| 662-800, gnl|oryCun1|scaffold_212446 (9651-9806) | |
| 662-800, gnl|panTro1|chr21 (1412988-1413153) | |
| 662-800, gnl|panTro1|chr7 (50148897-50149037) | |
| 662-800, gnl|rheMac2|chr10 (34715961-34716126) | |
| 662-800, gnl|rheMac2|chr8 (50016792-50016922) | |
| 662-800, gnl|rn3|chr17 (65712894-65712755) | |
| 662-800, gnl|rn3|chr3 (141718393-141718232) | |
| 662-800, gnl|tetNig1|chrUn_random (84313525-84313664) | |
| 662-800, gnl|tetNig1|chrUn_random (84313518-84313677) | |
| 954-1369, gnl|bosTau2|chr13 (41229685-41230100) | |
| 954-1369, gnl|Hg17|chr20 (1372568-1372156) | |
| 954-1369, gnl|Mm7|chr2 (151251752-151252153) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| fhi (0.339155) | |
| fce (0.271592) | |
| pla (0.267344) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| nco (0.161734) | |
| nca (0.136874) | |
| ute (0.132784) | |
| cov (0.132153) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| jca (0.11396) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (0.339155) | |
| fce (0.271592) | |
| pla (0.267344) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| nco (0.161734) | |
| nca (0.136874) | |
| ute (0.132784) | |
| cov (0.132153) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| jca (0.11396) |