Non-Coding RNA Search

Ss1.1-Pig4-TMW8056L08.3

Sequence:


               
               CATTGTACTTTTCTGGTTTTTAAAAGAAATGCAGATGTGTGTAAAATATCTGTTTTCAAT
TATGTTAATCTGTGTGCATGGTATTGGAGCATTACATTATTAATGTTTAGTCACAAATGC
TTTTTTTTCTGGGATCCACAAAAGACAGTCTTAAACATTTTGAGTTGTTCATAATGTTTG
TCTTGTGATAGTCCTGGCACTTAACAATTCGTTTTTCTGTCAGTAAAAGCAAGCTCAAAT
TTATTATTGTGTCAATGAAATACATTTAGTTCAAACAGCACTTTTCTTTCAAAGTAACTG
ATTTGCCAGTCATTTAAAAAGCTGAGGCACTGGTGGTTAAGATAAGGTGAGCACATTTTG
ATATGGTAATTGTTTTGGTTGGCTTGTCTTGTCAGTGTTATGTTTGACTAAAGTGCTTTT
CATATGCAAACTAGATCTGCTACTTCTTTCATCCCAGGAACGAGCATGGAGTGCCTCCTG
TCTTATTTACTGCTCGCAGGCCACTGTACCCTACAGGGGAAAAAGAAAATATTGCATTTA
AAAAGGTGATAGTTTTGTCAGTATCACTGTTTTTAAAAGATATACATTTAAGGGAATATT
AATTGGGAGAAACCTGTAAGGCTTTTAGAATATTATCAGTATATCATTTCTAATATTCAA
ATGTTATGTGATATAAACACCTTCTCTTGTCTTTTCTGAATGCACTATATATTTGTTCAT
GGGTAAATCTATAAAATGTATATATTGTATTTGGTGGTTTTGCTATTTATAAATTTTATG
TTTTAACTATAGGTCATTTATGATTTGTTTGGGGTGGTTTTGTTCATCTGTGTATCACCA
TGTTAATTTGTAATGGAAATGTACTTCAGAATATATATGGTTACTTATATTAAAATACCT
TATAGCAGAACATTGCCTCTAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTGTACTTTTCTGGTTTTTAAAAGAAATGCAGATGTGTGTAAAATATCTGTTTTCAAT
TATGTTAATCTGTGTGCATGGTATTGGAGCATTACATTATTAATGTTTAGTCACAAATGC
TTTTTTTTCTGGGATCCACAAAAGACAGTCTTAAACATTTTGAGTTGTTCATAATGTTTG
TCTTGTGATAGTCCTGGCACTTAACAATTCGTTTTTCTGTCAGTAAAAGCAAGCTCAAAT
TTATTATTGTGTCAATGAAATACATTTAGTTCAAACAGCACTTTTCTTTCAAAGTAACTG
ATTTGCCAGTCATTTAAAAAGCTGAGGCACTGGTGGTTAAGATAAGGTGAGCACATTTTG
ATATGGTAATTGTTTTGGTTGGCTTGTCTTGTCAGTGTTATGTTTGACTAAAGTGCTTTT
CATATGCAAACTAGATCTGCTACTTCTTTCATCCCAGGAACGAGCATGGAGTGCCTCCTG
TCTTATTTACTGCTCGCAGGCCACTGTACCCTACAGGGGAAAAAGAAAATATTGCATTTA
AAAAGGTGATAGTTTTGTCAGTATCACTGTTTTTAAAAGATATACATTTAAGGGAATATT
AATTGGGAGAAACCTGTAAGGCTTTTAGAATATTATCAGTATATCATTTCTAATATTCAA
ATGTTATGTGATATAAACACCTTCTCTTGTCTTTTCTGAATGCACTATATATTTGTTCAT
GGGTAAATCTATAAAATGTATATATTGTATTTGGTGGTTTTGCTATTTATAAATTTTATG
TTTTAACTATAGGTCATTTATGATTTGTTTGGGGTGGTTTTGTTCATCTGTGTATCACCA
TGTTAATTTGTAATGGAAATGTACTTCAGAATATATATGGTTACTTATATTAAAATACCT
TATAGCAGAACATTGCCTCTAAGC

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               2-924, gnl|bosTau2|chr9 (17828239-17827317)
               

               
               2-924, gnl|canFam2|chr1 (60840931-60841512)
               

               
               2-924, gnl|echTel1|scaffold_308339 (7226-7771)
               

               
               2-924, gnl|hg17|chr6 (117989531-117990100)
               

               
               2-924, gnl|Hg17|chr6 (117990438-117989531)
               

               
               2-924, gnl|loxAfr1|scaffold_94857 (8481-7916)
               

               
               2-924, gnl|mm7|chr10 (52153319-52153864)
               

               
               2-924, gnl|Mm7|chr10 (52154176-52153319)
               

               
               2-924, gnl|monDom2|scaffold_0 (99890533-99889955)
               

               
               2-924, gnl|panTro1|chr5 (120373089-120373658)
               

               
               2-924, gnl|rheMac2|chr4 (146426713-146426142)
               

               
               2-924, gnl|rn3|chr20 (31070283-31070806)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-924, gnl|bosTau2|chr9 (17828239-17827317)
               

               
               2-924, gnl|canFam2|chr1 (60840931-60841512)
               

               
               2-924, gnl|echTel1|scaffold_308339 (7226-7771)
               

               
               2-924, gnl|hg17|chr6 (117989531-117990100)
               

               
               2-924, gnl|Hg17|chr6 (117990438-117989531)
               

               
               2-924, gnl|loxAfr1|scaffold_94857 (8481-7916)
               

               
               2-924, gnl|mm7|chr10 (52153319-52153864)
               

               
               2-924, gnl|Mm7|chr10 (52154176-52153319)
               

               
               2-924, gnl|monDom2|scaffold_0 (99890533-99889955)
               

               
               2-924, gnl|panTro1|chr5 (120373089-120373658)
               

               
               2-924, gnl|rheMac2|chr4 (146426713-146426142)
               

               
               2-924, gnl|rn3|chr20 (31070283-31070806)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fcc (0.197785)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)

	2-924, gnl\|bosTau2\|chr9 (17828239-17827317)
	2-924, gnl\|canFam2\|chr1 (60840931-60841512)
	2-924, gnl\|echTel1\|scaffold_308339 (7226-7771)
	2-924, gnl\|hg17\|chr6 (117989531-117990100)
	2-924, gnl\|Hg17\|chr6 (117990438-117989531)
	2-924, gnl\|loxAfr1\|scaffold_94857 (8481-7916)
	2-924, gnl\|mm7\|chr10 (52153319-52153864)
	2-924, gnl\|Mm7\|chr10 (52154176-52153319)
	2-924, gnl\|monDom2\|scaffold_0 (99890533-99889955)
	2-924, gnl\|panTro1\|chr5 (120373089-120373658)
	2-924, gnl\|rheMac2\|chr4 (146426713-146426142)
	2-924, gnl\|rn3\|chr20 (31070283-31070806)