Ss1.1-Pig4-TMW8056L09.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACAGGCCGGGCATTGATGGTAATGTATGCGAGGAAACAGCAGAGACTCAGTGATGGCTG TCACGACCGGAGGGGGGACTCGCAGCCTTACCAGGCACTTAAGTATTCATCGAAGAGTCA CCCCAGTAGTGGTGATCACAGACATGAAAAAATGCGAGACGCCGCAGATCCTTCACCACC AAATAAAATGTTGCGGAGATCTGATAGTCCTGAAAACAAATACAGTGACAGTACAGGTCA CAGTAAGGCCAAAAACGTGCATATTCACAGAGTTAGAGAGAGGGATGGTGGGACCAGTTA CTCTCCACAAGAAAATTCACACAACCACAGTGCTCTTCATAGTTCAAATTCACATTCTTC TAATCCAAGCAATAATCCAAGCAAAACTTCAGATGCACCTTATGATTCTGCAGATGACTG GTCTGAACATATTAGCTCTTCTGGGAAAAAATACTACTACAATTGTCGAACAGAAGTTTC ACAATGGGAAAAACCAAAAGAGTGGCTTGAAAGAGAGCAGAGACAAAAAGAAGCAAACAA GATGGCAGTTAATAGTTTCCCAAAAGATAGGGATTACAGAAGAGAGGTGATGCAGGCAAC AGCCACTAGTGGGTTTGCCAGTGGAATGGAAGACAAGCATTCCAGTGATGCCAGTAGTTT GCTCCCACAGAATATTTTGTCTCAAACAAGCAGACACAATGACAGAGACTACAGACTGCC AAGAGCAGAGACTCACAGTAGTTCTACGCCAGTACAGCACCCCATCAAACCAGTGGTTCA TCCAACTGCTACCCCAAGCACTGTTCCTTCTAGTCCATTTACGCTACAGTCTGATCACCA GCCAAAGAAATCATTTGATGCTAATGGAGCATCAACTTTATCAAAACTGCCTACACCCAC ATCTTCTGTCCCTGCACAGAAAACAGAAAGAAAAGAATCTACATCGGGAGACAAATCTGT GTCACACGTTTGCACAACTCCTTCCACGTCTTCAGCATCTGGACTGAACCCCACATCTGC ACCTCCAACGTCCGCTTCAGCCATCCCCGTTTCTCCTGTCCCACAGTCACCAATACCTCC GCTACTTCAGGACCCAAATCTTCTTAGACAGTTACTTCCTGCTTTGCAGGCCACACTGCA ACTTAATAATTCTAATGTGGACATATCCAAAATAAATGAAGTTCTTACAGCAGCTGTGAC ACAAGCCTCATTGCAGTCTATAATTCACAAGTTTCTTACTGCTGGACCATCTGCTTTCAA CCTAACTTCTCTGATTTCTCAAGCTACTCAGCTGTCTACACAAGCCCAGCCATCTAATCA GTCTCCAATGTCGTTAACGTCTGATGCGTCATCCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACAGGCCGGGCATTGATGGTAATGTATGCGAGGAAACAGCAGAGACTCAGTGATGGCTG TCACGACCGGAGGGGGGACTCGCAGCCTTACCAGGCACTTAAGTATTCATCGAAGAGTCA CCCCAGTAGTGGTGATCACAGACATGAAAAAATGCGAGACGCCGCAGATCCTTCACCACC AAATAAAATGTTGCGGAGATCTGATAGTCCTGAAAACAAATACAGTGACAGTACAGGTCA CAGTAAGGCCAAAAACGTGCATATTCACAGAGTTAGAGAGAGGGATGGTGGGACCAGTTA CTCTCCACAAGAAAATTCACACAACCACAGTGCTCTTCATAGTTCAAATTCACATTCTTC TAATCCAAGCAATAATCCAAGCAAAACTTCAGATGCACCTTATGATTCTGCAGATGACTG GTCTGAACATATTAGCTCTTCTGGGAAAAAATACTACTACAATTGTCGAACAGAAGTTTC ACAATGGGAAAAACCAAAAGAGTGGCTTGAAAGAGAGCAGAGACAAAAAGAAGCAAACAA GATGGCAGTTAATAGTTTCCCAAAAGATAGGGATTACAGAAGAGAGGTGATGCAGGCAAC AGCCACTAGTGGGTTTGCCAGTGGAATGGAAGACAAGCATTCCAGTGATGCCAGTAGTTT GCTCCCACAGAATATTTTGTCTCAAACAAGCAGACACAATGACAGAGACTACAGACTGCC AAGAGCAGAGACTCACAGTAGTTCTACGCCAGTACAGCACCCCATCAAACCAGTGGTTCA TCCAACTGCTACCCCAAGCACTGTTCCTTCTAGTCCATTTACGCTACAGTCTGATCACCA GCCAAAGAAATCATTTGATGCTAATGGAGCATCAACTTTATCAAAACTGCCTACACCCAC ATCTTCTGTCCCTGCACAGAAAACAGAAAGAAAAGAATCTACATCGGGAGACAAATCTGT GTCACACGTTTGCACAACTCCTTCCACGTCTTCAGCATCTGGACTGAACCCCACATCTGC ACCTCCAACGTCCGCTTCAGCCATCCCCGTTTCTCCTGTCCCACAGTCACCAATACCTCC GCTACTTCAGGACCCAAATCTTCTTAGACAGTTACTTCCTGCTTTGCAGGCCACACTGCA ACTTAATAATTCTAATGTGGACATATCCAAAATAAATGAAGTTCTTACAGCAGCTGTGAC ACAAGCCTCATTGCAGTCTATAATTCACAAGTTTCTTACTGCTGGACCATCTGCTTTCAA CCTAACTTCTCTGATTTCTCAAGCTACTCAGCTGTCTACACAAGCCCAGCCATCTAATCA GTCTCCAATGTCGTTAACGTCTGATGCGTCATCCCC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 92-291, gnl|bosTau2|chr13 (16615708-16615907) | |
| 92-291, gnl|Hg17|chr10 (28864494-28864693) | |
| 92-291, gnl|Mm7|chr18 (8075300-8075499) | |
| 398-513, gnl|bosTau2|chr13 (16661080-16661195) | |
| 398-513, gnl|canFam2|chr2 (20426112-20425963) | |
| 398-513, gnl|danRer3|chr15 (26584064-26584196) | |
| 398-513, gnl|dasNov1|scaffold_27503 (2261-2373) | |
| 398-513, gnl|echTel1|scaffold_320550 (19886-19736) | |
| 398-513, gnl|fr1|chrUn (230525930-230526076) | |
| 398-513, gnl|galGal2|chr2 (14699926-14699798) | |
| 398-513, gnl|hg17|chr10 (28918642-28918793) | |
| 398-513, gnl|Hg17|chr10 (28918671-28918786) | |
| 398-513, gnl|loxAfr1|scaffold_2791 (30690-30539) | |
| 398-513, gnl|mm7|chr18 (8109130-8109276) | |
| 398-513, gnl|Mm7|chr18 (8109154-8109269) | |
| 398-513, gnl|monDom2|scaffold_7 (39878977-39878840) | |
| 398-513, gnl|oryCun1|scaffold_176681 (63691-63840) | |
| 398-513, gnl|panTro1|chr8 (29263671-29263822) | |
| 398-513, gnl|rheMac2|chr9 (28683150-28683301) | |
| 398-513, gnl|rn3|chr17 (64579898-64580044) | |
| 398-513, gnl|tetNig1|chrUn_random (133026565-133026414) | |
| 398-513, gnl|xenTro1|scaffold_42 (215555-215412) | |
| 627-935, gnl|bosTau2|chr13 (16666165-16666473) | |
| 627-935, gnl|canFam2|chr2 (20421016-20420802) | |
| 627-935, gnl|dasNov1|scaffold_119121 (2520-2732) | |
| 627-935, gnl|echTel1|scaffold_320550 (15058-14843) | |
| 627-935, gnl|galGal2|chr2 (14697801-14697590) | |
| 627-935, gnl|hg17|chr10 (28924642-28924856) | |
| 627-935, gnl|Hg17|chr10 (28924668-28924976) | |
| 627-935, gnl|mm7|chr18 (8114245-8114458) | |
| 627-935, gnl|Mm7|chr18 (8114270-8114578) | |
| 627-935, gnl|monDom2|scaffold_7 (39871871-39871661) | |
| 627-935, gnl|oryCun1|scaffold_206736 (301122-300911) | |
| 627-935, gnl|panTro1|chr8 (29269693-29269907) | |
| 627-935, gnl|rheMac2|chr9 (28689300-28689514) | |
| 627-935, gnl|xenTro1|scaffold_42 (212719-212502) | |
| 1180-1304, gnl|bosTau2|chr13 (16678550-16678674) | |
| 1180-1304, gnl|canFam2|chr2 (20407341-20407213) | |
| 1180-1304, gnl|danRer3|chr15 (26604188-26604316) | |
| 1180-1304, gnl|dasNov1|scaffold_27503 (2710-2834) | |
| 1180-1304, gnl|echTel1|scaffold_320550 (1333-1209) | |
| 1180-1304, gnl|fr1|chrUn (230538871-230539002) | |
| 1180-1304, gnl|galGal2|chr2 (14686026-14685898) | |
| 1180-1304, gnl|hg17|chr10 (28939629-28939757) | |
| 1180-1304, gnl|Hg17|chr10 (28939632-28939756) | |
| 1180-1304, gnl|loxAfr1|scaffold_2791 (15238-15110) | |
| 1180-1304, gnl|mm7|chr18 (8121302-8121430) | |
| 1180-1304, gnl|Mm7|chr18 (8121305-8121429) | |
| 1180-1304, gnl|monDom2|scaffold_7 (39837245-39837117) | |
| 1180-1304, gnl|oryCun1|scaffold_206273 (57100-57228) | |
| 1180-1304, gnl|panTro1|chr8 (29286510-29286638) | |
| 1180-1304, gnl|rheMac2|chr9 (28704207-28704335) | |
| 1180-1304, gnl|rn3|chr17 (64593133-64593261) | |
| 1180-1304, gnl|tetNig1|chrUn_random (133025317-133025189) | |
| 1180-1304, gnl|xenTro1|scaffold_42 (206163-206037) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 92-291, gnl|bosTau2|chr13 (16615708-16615907) | |
| 92-291, gnl|Hg17|chr10 (28864494-28864693) | |
| 92-291, gnl|Mm7|chr18 (8075300-8075499) | |
| 398-513, gnl|bosTau2|chr13 (16661080-16661195) | |
| 398-513, gnl|canFam2|chr2 (20426112-20425963) | |
| 398-513, gnl|danRer3|chr15 (26584064-26584196) | |
| 398-513, gnl|dasNov1|scaffold_27503 (2261-2373) | |
| 398-513, gnl|echTel1|scaffold_320550 (19886-19736) | |
| 398-513, gnl|fr1|chrUn (230525930-230526076) | |
| 398-513, gnl|galGal2|chr2 (14699926-14699798) | |
| 398-513, gnl|hg17|chr10 (28918642-28918793) | |
| 398-513, gnl|Hg17|chr10 (28918671-28918786) | |
| 398-513, gnl|loxAfr1|scaffold_2791 (30690-30539) | |
| 398-513, gnl|mm7|chr18 (8109130-8109276) | |
| 398-513, gnl|Mm7|chr18 (8109154-8109269) | |
| 398-513, gnl|monDom2|scaffold_7 (39878977-39878840) | |
| 398-513, gnl|oryCun1|scaffold_176681 (63691-63840) | |
| 398-513, gnl|panTro1|chr8 (29263671-29263822) | |
| 398-513, gnl|rheMac2|chr9 (28683150-28683301) | |
| 398-513, gnl|rn3|chr17 (64579898-64580044) | |
| 398-513, gnl|tetNig1|chrUn_random (133026565-133026414) | |
| 398-513, gnl|xenTro1|scaffold_42 (215555-215412) | |
| 627-935, gnl|bosTau2|chr13 (16666165-16666473) | |
| 627-935, gnl|canFam2|chr2 (20421016-20420802) | |
| 627-935, gnl|dasNov1|scaffold_119121 (2520-2732) | |
| 627-935, gnl|echTel1|scaffold_320550 (15058-14843) | |
| 627-935, gnl|galGal2|chr2 (14697801-14697590) | |
| 627-935, gnl|hg17|chr10 (28924642-28924856) | |
| 627-935, gnl|Hg17|chr10 (28924668-28924976) | |
| 627-935, gnl|mm7|chr18 (8114245-8114458) | |
| 627-935, gnl|Mm7|chr18 (8114270-8114578) | |
| 627-935, gnl|monDom2|scaffold_7 (39871871-39871661) | |
| 627-935, gnl|oryCun1|scaffold_206736 (301122-300911) | |
| 627-935, gnl|panTro1|chr8 (29269693-29269907) | |
| 627-935, gnl|rheMac2|chr9 (28689300-28689514) | |
| 627-935, gnl|xenTro1|scaffold_42 (212719-212502) | |
| 1180-1304, gnl|bosTau2|chr13 (16678550-16678674) | |
| 1180-1304, gnl|canFam2|chr2 (20407341-20407213) | |
| 1180-1304, gnl|danRer3|chr15 (26604188-26604316) | |
| 1180-1304, gnl|dasNov1|scaffold_27503 (2710-2834) | |
| 1180-1304, gnl|echTel1|scaffold_320550 (1333-1209) | |
| 1180-1304, gnl|fr1|chrUn (230538871-230539002) | |
| 1180-1304, gnl|galGal2|chr2 (14686026-14685898) | |
| 1180-1304, gnl|hg17|chr10 (28939629-28939757) | |
| 1180-1304, gnl|Hg17|chr10 (28939632-28939756) | |
| 1180-1304, gnl|loxAfr1|scaffold_2791 (15238-15110) | |
| 1180-1304, gnl|mm7|chr18 (8121302-8121430) | |
| 1180-1304, gnl|Mm7|chr18 (8121305-8121429) | |
| 1180-1304, gnl|monDom2|scaffold_7 (39837245-39837117) | |
| 1180-1304, gnl|oryCun1|scaffold_206273 (57100-57228) | |
| 1180-1304, gnl|panTro1|chr8 (29286510-29286638) | |
| 1180-1304, gnl|rheMac2|chr9 (28704207-28704335) | |
| 1180-1304, gnl|rn3|chr17 (64593133-64593261) | |
| 1180-1304, gnl|tetNig1|chrUn_random (133025317-133025189) | |
| 1180-1304, gnl|xenTro1|scaffold_42 (206163-206037) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| pla (0.133672) | |
| cov (0.132153) | |
| eep (0.122564) | |
| cty (0.10408) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) | |
| cov (0.132153) | |
| eep (0.122564) | |
| cty (0.10408) |