Non-Coding RNA Search

Ss1.1-Pig4-TMW8056L11.5

Sequence:


               
               GGTGTGTTTGTGCAAAGTTCTCGATCGCTGCTGGACCCAGAGCCCTGGGGACACACGCCT
TCCTCTAGATGTTGGCTGTTGTGCCTTTGAAAAGCCTTTGAGCACCCCTTGGGAGGCCCC
CCTTTTCCGGTGGGAAGTTAGGGGGGTCCTCGGCAGTGGCTGGTTGGAGGGGGACCAGGC
TGGGCTCGGAGAAGGTGGCAGGCAGAGCTCGGCTTTCTCCAATCCTCTCGTTTCCCTGCT
TGTCAATCATCACATTTCCTCCGGCGGAAAACCATTTCCCCCCCAAGCCCAGGTCTACGC
AGACGGACTTGGCTCAGGTGCACCGAGAGCTGTGCACGGTCCAGTGTTTTGCCAGGAGCT
GAGAGCGACTCCTGTCCCCACGTCTAGCGAGCCCCGGGGCAGGGACTGCATCGGTCCCCT
GTCCTTGTCTGTCTTCTCTGTGAATTGTACGTTTCAGAGAATTACTGTTGTTTTCCTACG
TGCAACACCAAGCTTCCAGATCCATAAAACCTCCTGATGATAAAGGAAAGAAGATGTTTC
GTTGGGTTTGGTTTTCCGGAAACTGCGCTTCAAATGTTGCTGTACTATATAGAGCTCAGA
AGGACACGCTGCATCCTCGTTCGCCTGCCTGATTCCACGGTGGTTGTGCCGATGGCGACG
CTTTGACGTTGCTCCCCTGGCCTTGGAACCGCTCCTCTTTGCAGCCCTGTTTCCCCAGTT
CTGTTCAAGTTCCACGTATGTAAACTCTCTGTGGCACGCTGGGTGCGGCGCCCACGTTGC
TGCTGCGCGAGACTCTGTATTTGGATGCCAATCCACAGCCCTGATGAAATCGCTTGTTGT
GTATCAGTAATCATTAGTGGCAATGATGACATTCTGAAAAGCTGCAATACTTATACAATA
AATTTTACAATTCTTTGGAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGTGTTTGTGCAAAGTTCTCGATCGCTGCTGGACCCAGAGCCCTGGGGACACACGCCT
TCCTCTAGATGTTGGCTGTTGTGCCTTTGAAAAGCCTTTGAGCACCCCTTGGGAGGCCCC
CCTTTTCCGGTGGGAAGTTAGGGGGGTCCTCGGCAGTGGCTGGTTGGAGGGGGACCAGGC
TGGGCTCGGAGAAGGTGGCAGGCAGAGCTCGGCTTTCTCCAATCCTCTCGTTTCCCTGCT
TGTCAATCATCACATTTCCTCCGGCGGAAAACCATTTCCCCCCCAAGCCCAGGTCTACGC
AGACGGACTTGGCTCAGGTGCACCGAGAGCTGTGCACGGTCCAGTGTTTTGCCAGGAGCT
GAGAGCGACTCCTGTCCCCACGTCTAGCGAGCCCCGGGGCAGGGACTGCATCGGTCCCCT
GTCCTTGTCTGTCTTCTCTGTGAATTGTACGTTTCAGAGAATTACTGTTGTTTTCCTACG
TGCAACACCAAGCTTCCAGATCCATAAAACCTCCTGATGATAAAGGAAAGAAGATGTTTC
GTTGGGTTTGGTTTTCCGGAAACTGCGCTTCAAATGTTGCTGTACTATATAGAGCTCAGA
AGGACACGCTGCATCCTCGTTCGCCTGCCTGATTCCACGGTGGTTGTGCCGATGGCGACG
CTTTGACGTTGCTCCCCTGGCCTTGGAACCGCTCCTCTTTGCAGCCCTGTTTCCCCAGTT
CTGTTCAAGTTCCACGTATGTAAACTCTCTGTGGCACGCTGGGTGCGGCGCCCACGTTGC
TGCTGCGCGAGACTCTGTATTTGGATGCCAATCCACAGCCCTGATGAAATCGCTTGTTGT
GTATCAGTAATCATTAGTGGCAATGATGACATTCTGAAAAGCTGCAATACTTATACAATA
AATTTTACAATTCTTTGGAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-919, gnl|bosTau2|chr13 (39843689-39844608)
               

               
               1-919, gnl|Hg17|chr20 (55657799-55656859)
               

               
               1-919, gnl|Mm7|chr2 (172969713-172968853)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-919, gnl|bosTau2|chr13 (39843689-39844608)
               

               
               1-919, gnl|Hg17|chr20 (55657799-55656859)
               

               
               1-919, gnl|Mm7|chr2 (172969713-172968853)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

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               gul (0.532765)
               

               
               amn (0.417711)
               

               
               cly (0.241284)
               

               
               cty (0.20816)
               

               
               aor (0.195274)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.532765)
               

               
               amn (0.417711)
               

               
               cly (0.241284)
               

               
               cty (0.20816)
               

               
               aor (0.195274)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)

	1-919, gnl\|bosTau2\|chr13 (39843689-39844608)
	1-919, gnl\|Hg17\|chr20 (55657799-55656859)
	1-919, gnl\|Mm7\|chr2 (172969713-172968853)

	gul (0.532765)
	amn (0.417711)
	cly (0.241284)
	cty (0.20816)
	aor (0.195274)
	eye (0.170503)
	cut (0.169924)
	bfe (0.149858)
	hyp (0.142837)
	lnt (0.142308)
	csk (0.140746)
	ova (0.129132)
	ebs (0.118301)
	nbm (0.0993246)