Non-Coding RNA Search

Ss1.1-Pig4-TMW8056L18.5

Sequence:


               
               GGCGCGTCGGCTTGCGGCGGACCAGCGCTGCTACCATGTACTGGCTCCGCGCTGCTTTGG
CGGGGACACGGCTGGTCCGGAGGGTGAGCGGCTCGACGGGGCGGTTTGGCGGGGCACCGG
GAGCTTCGGCCTCTGGGATGGGGAACCACACGTCATCTTCTTTGGGGAACACAGCAGCTG
CTCCCGTGAATCAGATCCAAGAAACAATTTCTAATAACTGTGTGGTGATTTTCTCCAAAA
CATCTTGTTCTTACTGTACCATGGCAAAAAAGCTTTTCCATGACATGAATGTTAGCTATA
AGGTGGTGGAGCTGGACCTGCTTGAATACGGAAGCCAGTTTCAAGACGCTCTTTGCACAA
TGACAGGTGACAGGACTGTGCCAAGAATATTTGTCAATGGAACTTTTATTGGAGGCGCAA
TGGACACTCATAGGCTTCACCAAGAAGGGAAACTGCTTCCACTAGTTCACCAGTGTTACT
TAAAAAAAAGTAAGAGGAAAGAATTTTAGTGATAGAGGCGCTTACAACTTTGCTAGTAAA
ATGTTGGCTGTAGGTTTTAAGTGACAATGTCTGATAATGCCTTTTACATATTTGGTAGTG
TTTTAAAAATAGGAATTATCTTGTTGAAAAAGTCATAAAAATAATGAGCAATAAATCACG
GTGGAAACCTTCAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGCGTCGGCTTGCGGCGGACCAGCGCTGCTACCATGTACTGGCTCCGCGCTGCTTTGG
CGGGGACACGGCTGGTCCGGAGGGTGAGCGGCTCGACGGGGCGGTTTGGCGGGGCACCGG
GAGCTTCGGCCTCTGGGATGGGGAACCACACGTCATCTTCTTTGGGGAACACAGCAGCTG
CTCCCGTGAATCAGATCCAAGAAACAATTTCTAATAACTGTGTGGTGATTTTCTCCAAAA
CATCTTGTTCTTACTGTACCATGGCAAAAAAGCTTTTCCATGACATGAATGTTAGCTATA
AGGTGGTGGAGCTGGACCTGCTTGAATACGGAAGCCAGTTTCAAGACGCTCTTTGCACAA
TGACAGGTGACAGGACTGTGCCAAGAATATTTGTCAATGGAACTTTTATTGGAGGCGCAA
TGGACACTCATAGGCTTCACCAAGAAGGGAAACTGCTTCCACTAGTTCACCAGTGTTACT
TAAAAAAAAGTAAGAGGAAAGAATTTTAGTGATAGAGGCGCTTACAACTTTGCTAGTAAA
ATGTTGGCTGTAGGTTTTAAGTGACAATGTCTGATAATGCCTTTTACATATTTGGTAGTG
TTTTAAAAATAGGAATTATCTTGTTGAAAAAGTCATAAAAATAATGAGCAATAAATCACG
GTGGAAACCTTCAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|20380874|gb|AAH28113.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|20380874|gb|AAH28113.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               378-668, gnl|bosTau2|chr16 (4734871-4735160)
               

               
               378-668, gnl|Hg17|chr1 (189797546-189797260)
               

               
               378-668, gnl|Mm7|chr1 (143672789-143673053)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               378-668, gnl|bosTau2|chr16 (4734871-4735160)
               

               
               378-668, gnl|Hg17|chr1 (189797546-189797260)
               

               
               378-668, gnl|Mm7|chr1 (143672789-143673053)

Expressed library(ies): 27 entry(ies)

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Expressed library(ies): 27 entry(ies)

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               cte (0.87822)
               

               
               mgp (0.692042)
               

               
               cki (0.495704)
               

               
               amn (0.417711)
               

               
               lyg (0.399308)
               

               
               aor (0.390549)
               

               
               cje (0.330469)
               

               
               mga (0.32041)
               

               
               fco (0.314416)
               

               
               bfe (0.299715)
               

               
               lin (0.291206)
               

               
               bla (0.248694)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               gul (0.177588)
               

               
               mcp (0.170648)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.87822)
               

               
               mgp (0.692042)
               

               
               cki (0.495704)
               

               
               amn (0.417711)
               

               
               lyg (0.399308)
               

               
               aor (0.390549)
               

               
               cje (0.330469)
               

               
               mga (0.32041)
               

               
               fco (0.314416)
               

               
               bfe (0.299715)
               

               
               lin (0.291206)
               

               
               bla (0.248694)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               gul (0.177588)
               

               
               mcp (0.170648)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	378-668, gnl\|bosTau2\|chr16 (4734871-4735160)
	378-668, gnl\|Hg17\|chr1 (189797546-189797260)
	378-668, gnl\|Mm7\|chr1 (143672789-143673053)

	cte (0.87822)
	mgp (0.692042)
	cki (0.495704)
	amn (0.417711)
	lyg (0.399308)
	aor (0.390549)
	cje (0.330469)
	mga (0.32041)
	fco (0.314416)
	bfe (0.299715)
	lin (0.291206)
	bla (0.248694)
	tes (0.207814)
	nlu (0.191681)
	gul (0.177588)
	mcp (0.170648)
	hyp (0.142837)
	csk (0.140746)
	cst (0.140036)
	che (0.136314)
	ute (0.132784)
	ret (0.128733)
	sug (0.127291)
	pgl (0.118483)
	med (0.116252)
	ecc (0.115035)
	spc (0.113366)