Non-Coding RNA Search

Ss1.1-Pig4-TMW8056L20.5

Sequence:


               
               CCCCCCCAAAAATTTTTTAAAGGCCCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC
CCTGAAATCCACTTTTATTCATGTAAAAAAATCCCCAATGGAGAGAGAAAGAATGTGACC
CCGACTTCCCAGAGGTCGGAAGTCTCCACCCAGTGCTCCCTGGGGACGTGAGGGAGATGA
CTCCCGCTCTAGGGTGTGGGTGCCATGGGGGCGAGGCCCTTCTGGCCCAGAGTGACCTGC
TCATCACCTTCCCTAGGACTGAGGGCAGGAAGGAGGGGCTGTGGACTAATGGGGGCCCCC
GGAGGGTGAAGGAAGGGAGTTAGTGTAGGGTGTTTGCCCTGGTTTAAAAAAATAAAATTT
CTAAAGATAAAAAGTTAAAAAAAAAAAAAAAAAAAAGCATTAGTGTCTTAGCCTCCTGCC
CTCCTCCCAGTGCCCACCCTGGTCCTGCGGCCACCTCTTGCTCAGCCAGTTCAGAGCTTC
GTATTCTCCTCTTGGCTCTCCGAGTCAGCGCCCGACAGGTGCCCGCCGCTCCCAGGCGCG
TGACCATTGCTGGCACAGGCCACCAGATGCCCGTCCCCCAGTCCCTCCGGTGTCTCGCCC
AGCAGGCTCCAGCGGATCTCCTGGGGCAGCCTCTCCCGCTGCTCCTGACACTCCTGGGCC
AGCTGGGCCAGCAGCTTGGGCTCTTCTTCTGCCAGCTGTTGTAGGATCTGCTGCTGCCCA
GCCACAAGGCGTTCATGCCGCTGCTTCTGGGCCTCCTCCAGCCGACGGATGGAGTTGACC
GACTCAGTGATGTGCCGACGGTTAATCTCTGTCAGTTCCGCCTCCTTCTTATGTTTCTCC
CTGGTCTTGGCCTCCGAGATGCTGTTGTGGCGCTTCCTGTCCAGGATCTTCTGCAGTTCC
TTCTTCTCCCTGTCATTCATCTCCTTCAGTCTCTTGAACTGAGTTGTGTGAGCCTCCATG
ACAACCTCCCTGAGCCGCTGCTGAGCCTGTTTCAGGTGCTCCAGCCTCCGCTCGGTCTCT
ATGTCAGCCTGGGCCTCCCTCAGCTCCAGCAGACACTGCACCTGTTTCTTTTGGAACTCC
TGATACCTCTTCACCTCCTCCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCCCCAAAAATTTTTTAAAGGCCCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC
CCTGAAATCCACTTTTATTCATGTAAAAAAATCCCCAATGGAGAGAGAAAGAATGTGACC
CCGACTTCCCAGAGGTCGGAAGTCTCCACCCAGTGCTCCCTGGGGACGTGAGGGAGATGA
CTCCCGCTCTAGGGTGTGGGTGCCATGGGGGCGAGGCCCTTCTGGCCCAGAGTGACCTGC
TCATCACCTTCCCTAGGACTGAGGGCAGGAAGGAGGGGCTGTGGACTAATGGGGGCCCCC
GGAGGGTGAAGGAAGGGAGTTAGTGTAGGGTGTTTGCCCTGGTTTAAAAAAATAAAATTT
CTAAAGATAAAAAGTTAAAAAAAAAAAAAAAAAAAAGCATTAGTGTCTTAGCCTCCTGCC
CTCCTCCCAGTGCCCACCCTGGTCCTGCGGCCACCTCTTGCTCAGCCAGTTCAGAGCTTC
GTATTCTCCTCTTGGCTCTCCGAGTCAGCGCCCGACAGGTGCCCGCCGCTCCCAGGCGCG
TGACCATTGCTGGCACAGGCCACCAGATGCCCGTCCCCCAGTCCCTCCGGTGTCTCGCCC
AGCAGGCTCCAGCGGATCTCCTGGGGCAGCCTCTCCCGCTGCTCCTGACACTCCTGGGCC
AGCTGGGCCAGCAGCTTGGGCTCTTCTTCTGCCAGCTGTTGTAGGATCTGCTGCTGCCCA
GCCACAAGGCGTTCATGCCGCTGCTTCTGGGCCTCCTCCAGCCGACGGATGGAGTTGACC
GACTCAGTGATGTGCCGACGGTTAATCTCTGTCAGTTCCGCCTCCTTCTTATGTTTCTCC
CTGGTCTTGGCCTCCGAGATGCTGTTGTGGCGCTTCCTGTCCAGGATCTTCTGCAGTTCC
TTCTTCTCCCTGTCATTCATCTCCTTCAGTCTCTTGAACTGAGTTGTGTGAGCCTCCATG
ACAACCTCCCTGAGCCGCTGCTGAGCCTGTTTCAGGTGCTCCAGCCTCCGCTCGGTCTCT
ATGTCAGCCTGGGCCTCCCTCAGCTCCAGCAGACACTGCACCTGTTTCTTTTGGAACTCC
TGATACCTCTTCACCTCCTCCTCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61881649|ref|XP_593729.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61881649|ref|XP_593729.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               154-1163, - strand, RNAz p=0.940574
               

               
               619-736, - strand, RNAz p=0.555323

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               154-1163, - strand, RNAz p=0.940574
               

               
               619-736, - strand, RNAz p=0.555323

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               119-736, gnl|bosTau2|chr29 (33384872-33384253)
               

               
               119-736, gnl|Hg17|chr11 (63791971-63791399)
               

               
               119-736, gnl|Mm7|chr19 (6773577-6774165)
               


               
               1046-1163, gnl|bosTau2|chr29 (33383372-33383255)
               

               
               1046-1163, gnl|Hg17|chr11 (63790088-63789971)
               

               
               1046-1163, gnl|Mm7|chr19 (6775070-6775184)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               119-736, gnl|bosTau2|chr29 (33384872-33384253)
               

               
               119-736, gnl|Hg17|chr11 (63791971-63791399)
               

               
               119-736, gnl|Mm7|chr19 (6773577-6774165)
               


               
               1046-1163, gnl|bosTau2|chr29 (33383372-33383255)
               

               
               1046-1163, gnl|Hg17|chr11 (63790088-63789971)
               

               
               1046-1163, gnl|Mm7|chr19 (6775070-6775184)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ill (0.351185)
               

               
               jej (0.197844)
               

               
               mcp (0.170648)
               

               
               ese (0.126502)
               

               
               eru (0.120048)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.351185)
               

               
               jej (0.197844)
               

               
               mcp (0.170648)
               

               
               ese (0.126502)
               

               
               eru (0.120048)

	154-1163, - strand, RNAz p=0.940574
	619-736, - strand, RNAz p=0.555323

	119-736, gnl\|bosTau2\|chr29 (33384872-33384253)
	119-736, gnl\|Hg17\|chr11 (63791971-63791399)
	119-736, gnl\|Mm7\|chr19 (6773577-6774165)

	1046-1163, gnl\|bosTau2\|chr29 (33383372-33383255)
	1046-1163, gnl\|Hg17\|chr11 (63790088-63789971)
	1046-1163, gnl\|Mm7\|chr19 (6775070-6775184)

	ill (0.351185)
	jej (0.197844)
	mcp (0.170648)
	ese (0.126502)
	eru (0.120048)