Non-Coding RNA Search

Ss1.1-Pig4-TMW8056L22.3

Sequence:


               
               ACCCCGGTTCCTTAGAAACCGGGCGGCGCGTTCCCGGTGGCTGCGAGCTAGTTTTCGGGG
CTGGTGCGTCCGCCCCTGCCTCCCTTACGGAAGGCGGGTGGCCGCTGAGACCTGTCCGGA
CCCGTGGTCTCCGGTGTAGCCCTGGGCGGGGGATGCCAGCGTGCCAGGAGCCATGTTTGA
CCAGGACCCTGGGAAGGTCATGCTGGAGACTCTTGTGAAGAGATGAATTGGTGAACAGAC
AAGCCGGCATGAAGATGCTTCCCGGAGTGGGCGTGTTTGGGACTGGCAGCTCTGCCCGGG
TTCTGGTCCCACTGCTGAGGGCAGAAGGGTTCACGGTGGAGGCCCTGTGGGGGAAGACTG
AGGAGGAGGCGAAGCAGCTCGCCGAGGAGATGAACATCACCTTCTACACCAGCCGCACCG
ATGATGTCTTGCTGCATCAAGATGTGGATCTGGTGTGCATCAACATCCCGCCTCCACTCA
CCCGGCAGATATCTGTGAAGGCTCTAGGTATTGGGAAGAACGTGGTTTGTGAGAAGGCAG
CAACCTCAGTGGATGCCTTCCGGATGGTGACAGCCTCTCGCTACTACCCACAGCTGATGA
GCCTGGTGGGGAACGTGCTGCGCTTCCTGCCTGCCTTCGTGCGCATGAAGCAGCTGATTG
CTGAGCACTACGTGGGTGCAGTGATGATCTGTGATGCTCGTGTCTACTCAGGCAGCCTGC
TCAGCCCCAACTATGGCTGGATCTGTGATGAACTCATGGGCGGCGGAGGCCTGCACACCA
TGGGCACCTACATTGTGGACCTACTGACCCACCTGACTGGCCGGAGAGCTGAGAAGGTGC
ATGGGCTGCTGAAGACCTTTGTGAGGCAGAATGCAGCCATCCGTGGCATCCGGCACGTCA
CCAGCGATGACTTCTGTTTCTTCCAGATGCTCATGGGAGGGGGGGTGTGCAGCACAGTAA
CACTCAACTTCAACATGCCAGGTGCCTTTGTGCACGAAGTCATGGTGGTAGGCTCTGCGG
GACGCCTTGTCGCCCGGGGAGCTGACCTCTATGGGCAGAAGAACTCTGCCACGCAAGAGG
AGCTGCTGCTGAGGGACTCGCTGGCTGTGGGCACGGAGCTGCCTGAGCAGGGGCCCCAGG
ATGTCCCACTGCTCTACCTGAAGGGCATGGTCTACATGGTACAGGCCCTGCGCCAGTCCT
TCCAGGGACAAGGGGACCGCCGCACATGGGACCACACCCCTGTCTCCATGGCCGCCTCCT
TCGAGGATGGGCTCTACATGCAGAGCGTGGTGGATGCCATCAAACGGTCGAGCCGATCCG
GGGAGTGGGAGGCTGTGGAGGTCTTGACGGAGGAGCCTGACGCCAACCAGAACCTATGCG
AGGCACTCCAGCGGAATAACCTGTGAGCCTACACATGGGCTCCTGGCCATGGGGCAAAGG
ACAAGGGAGGGACCAGGAGCTGTGATGGGAACACTTGGCTACAGCACAGACAGTGTCTTT
CATTTGACGCGTCAACTTGGGTGGGGTTGAGTTTGGGTGAATCCAAAGCTGGCCCCGGGA
GAATGCCCCCTCCATTGCACATTTACTCCTCTGGCTGGTGGGGTGGGCACATTCCTGCTG
CCCTGGCTGAGAGGGCTGGCACACTGGGCAAGGCGGAGCTGCCCTGGGTGTCTGCATAGT
TTGTTGGTGAGCAGGGCCAGCAAAGCCTAAGTTGTGGTCCTAACTGGATGAGAAAGCAGA
GTTGGGAGCCAGCTTGGCTTATTGCTCATGCCAGAGGAGAAATGACAAGAGGCCCTGTCT
CCATGCCCTTCCTGGGCTAGGGCTTCTCAGGAACAGTGAGGGCAGCGAGTCATCCCTCAG
GGAACCACACCTGCCCTCTCTCCCAGGCAACCTTCCGGCTTCCAGGCTGCCCCTTCCCTG
GCAGGGAGGAGGGGTTCTTCAGTAGGTGAGCTCTCAGGGACTGTTGACCTAGGGCAGAGG
GCCCTTGATTTGGCAGAGGGGAGACAGGGAGAGCTCTGGAACATCTGATAATGTTAGTAA
ATAAATCAGAAAGTCTGACAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCCCGGTTCCTTAGAAACCGGGCGGCGCGTTCCCGGTGGCTGCGAGCTAGTTTTCGGGG
CTGGTGCGTCCGCCCCTGCCTCCCTTACGGAAGGCGGGTGGCCGCTGAGACCTGTCCGGA
CCCGTGGTCTCCGGTGTAGCCCTGGGCGGGGGATGCCAGCGTGCCAGGAGCCATGTTTGA
CCAGGACCCTGGGAAGGTCATGCTGGAGACTCTTGTGAAGAGATGAATTGGTGAACAGAC
AAGCCGGCATGAAGATGCTTCCCGGAGTGGGCGTGTTTGGGACTGGCAGCTCTGCCCGGG
TTCTGGTCCCACTGCTGAGGGCAGAAGGGTTCACGGTGGAGGCCCTGTGGGGGAAGACTG
AGGAGGAGGCGAAGCAGCTCGCCGAGGAGATGAACATCACCTTCTACACCAGCCGCACCG
ATGATGTCTTGCTGCATCAAGATGTGGATCTGGTGTGCATCAACATCCCGCCTCCACTCA
CCCGGCAGATATCTGTGAAGGCTCTAGGTATTGGGAAGAACGTGGTTTGTGAGAAGGCAG
CAACCTCAGTGGATGCCTTCCGGATGGTGACAGCCTCTCGCTACTACCCACAGCTGATGA
GCCTGGTGGGGAACGTGCTGCGCTTCCTGCCTGCCTTCGTGCGCATGAAGCAGCTGATTG
CTGAGCACTACGTGGGTGCAGTGATGATCTGTGATGCTCGTGTCTACTCAGGCAGCCTGC
TCAGCCCCAACTATGGCTGGATCTGTGATGAACTCATGGGCGGCGGAGGCCTGCACACCA
TGGGCACCTACATTGTGGACCTACTGACCCACCTGACTGGCCGGAGAGCTGAGAAGGTGC
ATGGGCTGCTGAAGACCTTTGTGAGGCAGAATGCAGCCATCCGTGGCATCCGGCACGTCA
CCAGCGATGACTTCTGTTTCTTCCAGATGCTCATGGGAGGGGGGGTGTGCAGCACAGTAA
CACTCAACTTCAACATGCCAGGTGCCTTTGTGCACGAAGTCATGGTGGTAGGCTCTGCGG
GACGCCTTGTCGCCCGGGGAGCTGACCTCTATGGGCAGAAGAACTCTGCCACGCAAGAGG
AGCTGCTGCTGAGGGACTCGCTGGCTGTGGGCACGGAGCTGCCTGAGCAGGGGCCCCAGG
ATGTCCCACTGCTCTACCTGAAGGGCATGGTCTACATGGTACAGGCCCTGCGCCAGTCCT
TCCAGGGACAAGGGGACCGCCGCACATGGGACCACACCCCTGTCTCCATGGCCGCCTCCT
TCGAGGATGGGCTCTACATGCAGAGCGTGGTGGATGCCATCAAACGGTCGAGCCGATCCG
GGGAGTGGGAGGCTGTGGAGGTCTTGACGGAGGAGCCTGACGCCAACCAGAACCTATGCG
AGGCACTCCAGCGGAATAACCTGTGAGCCTACACATGGGCTCCTGGCCATGGGGCAAAGG
ACAAGGGAGGGACCAGGAGCTGTGATGGGAACACTTGGCTACAGCACAGACAGTGTCTTT
CATTTGACGCGTCAACTTGGGTGGGGTTGAGTTTGGGTGAATCCAAAGCTGGCCCCGGGA
GAATGCCCCCTCCATTGCACATTTACTCCTCTGGCTGGTGGGGTGGGCACATTCCTGCTG
CCCTGGCTGAGAGGGCTGGCACACTGGGCAAGGCGGAGCTGCCCTGGGTGTCTGCATAGT
TTGTTGGTGAGCAGGGCCAGCAAAGCCTAAGTTGTGGTCCTAACTGGATGAGAAAGCAGA
GTTGGGAGCCAGCTTGGCTTATTGCTCATGCCAGAGGAGAAATGACAAGAGGCCCTGTCT
CCATGCCCTTCCTGGGCTAGGGCTTCTCAGGAACAGTGAGGGCAGCGAGTCATCCCTCAG
GGAACCACACCTGCCCTCTCTCCCAGGCAACCTTCCGGCTTCCAGGCTGCCCCTTCCCTG
GCAGGGAGGAGGGGTTCTTCAGTAGGTGAGCTCTCAGGGACTGTTGACCTAGGGCAGAGG
GCCCTTGATTTGGCAGAGGGGAGACAGGGAGAGCTCTGGAACATCTGATAATGTTAGTAA
ATAAATCAGAAAGTCTGACAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5BIP5_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5BIP5_BOVIN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1784-1933, - strand, RNAz p=0.99349

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1784-1933, - strand, RNAz p=0.99349

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               506-2060, gnl|bosTau2|chr18 (15137780-15139337)
               

               
               506-2060, gnl|Hg17|chr16 (66267459-66265936)
               

               
               506-2060, gnl|Mm7|chr8 (104316439-104314895)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               506-2060, gnl|bosTau2|chr18 (15137780-15139337)
               

               
               506-2060, gnl|Hg17|chr16 (66267459-66265936)
               

               
               506-2060, gnl|Mm7|chr8 (104316439-104314895)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               fce (0.271592)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	506-2060, gnl\|bosTau2\|chr18 (15137780-15139337)
	506-2060, gnl\|Hg17\|chr16 (66267459-66265936)
	506-2060, gnl\|Mm7\|chr8 (104316439-104314895)

	fce (0.271592)
	hyp (0.142837)
	cov (0.132153)
	eep (0.122564)
	ebs (0.118301)
	ecc (0.115035)
	cty (0.10408)