Non-Coding RNA Search

Ss1.1-Pig4-TMW8056M07.5

Sequence:


               
               GAAAAACAGAATATATTGAACAGCAATTTGACAACTCTTTCTCAAGATGTTACAAAAATA
GACCAAAGTACAACTTCCATGGCAAAAGATGTTGGCCTCAAGATTACAACTGTAAAAACA
GATATACGACGTATTTCAGGTTTAGTAACTGATGTAACGTCATTGAAAGATTCTGTGCAA
GAACTAGAAAATAAAATAGAAAAAGTAGAAAAAAATACAGTAAAAAACATAGGTGATCTT
CTTTCAAGTAGCATTGATCGAACAGCAATGCTCCGAAAGACAGCATCTGAAAATTCGCAA
AGAATTAACTCTGTCAAGAGAATACTTTCTGAGCTACAGAATGATTTCAACAAGCACACA
GATAGGTTTTTAAGTTTAGAAAGTGACAGAGCTAAGGTTCTAAAGACAGTGACTTTTGCA
AATGATCTAAAACCAAAGGTGCATAATCTAAAGAAGGACTTTTCCCGATTAGAACCACTG
GTAAATGACTTAACACTTCGCATTGGGAGATTGGTTACTGACTTATTACAAAGGGAGAAA
GAAATTGCTTTCCTAAATGAGAAAATATCCAACTTAACAACAGTCCGAGCTGAGATTAAG
GATATGAAAGATGAAATAAAACACATTTCAGATATGGATTAGCTTGAAATTATTTAGATC
AGAGGAACGTGGCTTTTTTTTAAATGGACCTCTGGTCATGTTATATAAAGACTGAGAAGT
CAGAAATGATGAAATTTTGGAGTAAGTACTATTTTGTATTGATTCTTTTTTGCACAGTAA
AAATAAAAACTTTTGAAGCCCTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAAACAGAATATATTGAACAGCAATTTGACAACTCTTTCTCAAGATGTTACAAAAATA
GACCAAAGTACAACTTCCATGGCAAAAGATGTTGGCCTCAAGATTACAACTGTAAAAACA
GATATACGACGTATTTCAGGTTTAGTAACTGATGTAACGTCATTGAAAGATTCTGTGCAA
GAACTAGAAAATAAAATAGAAAAAGTAGAAAAAAATACAGTAAAAAACATAGGTGATCTT
CTTTCAAGTAGCATTGATCGAACAGCAATGCTCCGAAAGACAGCATCTGAAAATTCGCAA
AGAATTAACTCTGTCAAGAGAATACTTTCTGAGCTACAGAATGATTTCAACAAGCACACA
GATAGGTTTTTAAGTTTAGAAAGTGACAGAGCTAAGGTTCTAAAGACAGTGACTTTTGCA
AATGATCTAAAACCAAAGGTGCATAATCTAAAGAAGGACTTTTCCCGATTAGAACCACTG
GTAAATGACTTAACACTTCGCATTGGGAGATTGGTTACTGACTTATTACAAAGGGAGAAA
GAAATTGCTTTCCTAAATGAGAAAATATCCAACTTAACAACAGTCCGAGCTGAGATTAAG
GATATGAAAGATGAAATAAAACACATTTCAGATATGGATTAGCTTGAAATTATTTAGATC
AGAGGAACGTGGCTTTTTTTTAAATGGACCTCTGGTCATGTTATATAAAGACTGAGAAGT
CAGAAATGATGAAATTTTGGAGTAAGTACTATTTTGTATTGATTCTTTTTTGCACAGTAA
AAATAAAAACTTTTGAAGCCCTAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61870506|ref|XP_593184.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61870506|ref|XP_593184.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-795, gnl|bosTau2|chr5 (39120787-39119995)
               

               
               1-795, gnl|Hg17|chr12 (97510472-97509689)
               

               
               1-795, gnl|Mm7|chr10 (90660641-90661398)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-795, gnl|bosTau2|chr5 (39120787-39119995)
               

               
               1-795, gnl|Hg17|chr12 (97510472-97509689)
               

               
               1-795, gnl|Mm7|chr10 (90660641-90661398)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               ret (0.257467)
               

               
               mgm (0.180343)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               nca (0.136874)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.257467)
               

               
               mgm (0.180343)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               nca (0.136874)

	1-795, gnl\|bosTau2\|chr5 (39120787-39119995)
	1-795, gnl\|Hg17\|chr12 (97510472-97509689)
	1-795, gnl\|Mm7\|chr10 (90660641-90661398)

	ret (0.257467)
	mgm (0.180343)
	eye (0.170503)
	cje (0.165235)
	bfe (0.149858)
	fat (0.147427)
	nca (0.136874)