Ss1.1-Pig4-TMW8056M10.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCGAGGGCGAGGTGAAGGCCAAGTACACAGCCCAGATGTACGAGCTCTTCAGTGAGGTG TTCGAGTGGCTCCCGCTGGCCCAGTGCATCAATGGCAAAGTGCTGATCATGCACGGGGGC TTGTTCAGTGAAGACGGCGTCACGCTGGATGACATCAGGAAGATCGAGCGGAGTCGGCAG CCTCCAGATTCAGGTCCCATGTGTGACCTGCTCTGGTCGGACCCACAGCCACAGAACGGG CGCTCGGTCAGCAAGCGGGGCGTGAGCTGCCAGTTCGGGCCTGACGTCACCAAGGCCTTC CTGGAGGAGAACCACCTGGACTACATCATCCGCAGCCACGAGGTCAAGGCCGAGGGCTAT GAGGTGGCCCACGGTGGCCGCTGTGTCACCGTCTTCTCTGCCCCCAACTACTGCGACCAG ATGGGGAACAAAGCCGCCTACATCCACCTCCGGGGCTCTGACCTGCGGCCCCAGTTCCAC CAGTTCACAGCAGTGCCTCATCCCGACGTCAAGCCCATGGCCTACGCCAGCACGCTGCTG CAGTTAGGGATGATGTGAGGCCCCCGCGGCAGGGCCCCGCTCCCCATCGACCCCAGGCCC AGCCCAGGGCAACGTTGGACCCCCTTTTACTTTGTAAAGTTTGTATTTATTCCCCTTTAG GTTTGCAGAGGGGGTGGGGGGCTGGCCAGATGGTCTGCTCCCTGGACAAAGGAGGAGGAG GTGGAGAGGCTGAGGGTGGGGCGCCGACCGGGCATTCTGGAGGGAGGCCAGCACCGCTGT GGGCGGGGCGGGGCCCAGAGGCTTCCCCGCCCCCCTCGTTTGCATGGCCCCTCCCCTGCT AAAGCAATAGGGCCCCGCCATAGGAAGACCCCTGGAAGGAGGGTCATCAGGGAGGCCTCA CCTGCACCCCCTCCTGGCAGCCCCGGGGCGGGGCAGGCTGGGGCTCACCCCCTTCCCCAG CTATTTTATGTCTGTAATTAAATATGTTAAAATAAAGTCATTATTGTAAGTCAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCGAGGGCGAGGTGAAGGCCAAGTACACAGCCCAGATGTACGAGCTCTTCAGTGAGGTG TTCGAGTGGCTCCCGCTGGCCCAGTGCATCAATGGCAAAGTGCTGATCATGCACGGGGGC TTGTTCAGTGAAGACGGCGTCACGCTGGATGACATCAGGAAGATCGAGCGGAGTCGGCAG CCTCCAGATTCAGGTCCCATGTGTGACCTGCTCTGGTCGGACCCACAGCCACAGAACGGG CGCTCGGTCAGCAAGCGGGGCGTGAGCTGCCAGTTCGGGCCTGACGTCACCAAGGCCTTC CTGGAGGAGAACCACCTGGACTACATCATCCGCAGCCACGAGGTCAAGGCCGAGGGCTAT GAGGTGGCCCACGGTGGCCGCTGTGTCACCGTCTTCTCTGCCCCCAACTACTGCGACCAG ATGGGGAACAAAGCCGCCTACATCCACCTCCGGGGCTCTGACCTGCGGCCCCAGTTCCAC CAGTTCACAGCAGTGCCTCATCCCGACGTCAAGCCCATGGCCTACGCCAGCACGCTGCTG CAGTTAGGGATGATGTGAGGCCCCCGCGGCAGGGCCCCGCTCCCCATCGACCCCAGGCCC AGCCCAGGGCAACGTTGGACCCCCTTTTACTTTGTAAAGTTTGTATTTATTCCCCTTTAG GTTTGCAGAGGGGGTGGGGGGCTGGCCAGATGGTCTGCTCCCTGGACAAAGGAGGAGGAG GTGGAGAGGCTGAGGGTGGGGCGCCGACCGGGCATTCTGGAGGGAGGCCAGCACCGCTGT GGGCGGGGCGGGGCCCAGAGGCTTCCCCGCCCCCCTCGTTTGCATGGCCCCTCCCCTGCT AAAGCAATAGGGCCCCGCCATAGGAAGACCCCTGGAAGGAGGGTCATCAGGGAGGCCTCA CCTGCACCCCCTCCTGGCAGCCCCGGGGCGGGGCAGGCTGGGGCTCACCCCCTTCCCCAG CTATTTTATGTCTGTAATTAAATATGTTAAAATAAAGTCATTATTGTAAGTCAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 613-721, - strand, RNAz p=0.964372 | |
| 761-996, - strand, RNAz p=0.992893 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 613-721, - strand, RNAz p=0.964372 | |
| 761-996, - strand, RNAz p=0.992893 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 1-113, gnl|bosTau2|chr18 (49850799-49850687) | |
| 1-113, gnl|canFam2|chr1 (112342218-112342044) | |
| 1-113, gnl|danRer3|chr15 (27446521-27446357) | |
| 1-113, gnl|dasNov1|scaffold_349 (157543-157371) | |
| 1-113, gnl|fr1|chrUn (97633142-97633302) | |
| 1-113, gnl|hg17|chr19 (51582183-51582355) | |
| 1-113, gnl|Hg17|chr19 (51582228-51582340) | |
| 1-113, gnl|mm7|chr7 (14770833-14770674) | |
| 1-113, gnl|Mm7|chr7 (14770784-14770673) | |
| 1-113, gnl|monDom2|scaffold_149 (2042285-2042124) | |
| 1-113, gnl|panTro1|chr20 (48858147-48858319) | |
| 1-113, gnl|rheMac2|chr19 (52743218-52743390) | |
| 1-113, gnl|rn3|chr1 (77426019-77425860) | |
| 1-113, gnl|tetNig1|chr16 (6267179-6267336) | |
| 1-113, gnl|xenTro1|scaffold_105 (1219547-1219713) | |
| 229-413, gnl|bosTau2|chr18 (49849945-49849761) | |
| 229-413, gnl|canFam2|chr1 (112340895-112340756) | |
| 229-413, gnl|danRer3|chr15 (27443380-27443224) | |
| 229-413, gnl|dasNov1|scaffold_349 (156406-156252) | |
| 229-413, gnl|fr1|chrUn (97633693-97633839) | |
| 229-413, gnl|hg17|chr19 (51583625-51583779) | |
| 229-413, gnl|Hg17|chr19 (51583631-51583828) | |
| 229-413, gnl|loxAfr1|scaffold_48198 (10317-10465) | |
| 229-413, gnl|mm7|chr7 (14769841-14769687) | |
| 229-413, gnl|Mm7|chr7 (14769829-14769636) | |
| 229-413, gnl|monDom2|scaffold_149 (2041706-2041565) | |
| 229-413, gnl|oryCun1|scaffold_212794 (42444-42308) | |
| 229-413, gnl|panTro1|chr20 (48859588-48859741) | |
| 229-413, gnl|rheMac2|chr19 (52744638-52744791) | |
| 229-413, gnl|rn3|chr1 (77424859-77424705) | |
| 229-413, gnl|tetNig1|chr16 (6267740-6267886) | |
| 229-413, gnl|xenTro1|scaffold_105 (1222088-1222232) | |
| 495-1013, gnl|bosTau2|chr18 (49848683-49848164) | |
| 495-1013, gnl|Hg17|chr19 (51585380-51585949) | |
| 495-1013, gnl|Mm7|chr7 (14768748-14768230) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-113, gnl|bosTau2|chr18 (49850799-49850687) | |
| 1-113, gnl|canFam2|chr1 (112342218-112342044) | |
| 1-113, gnl|danRer3|chr15 (27446521-27446357) | |
| 1-113, gnl|dasNov1|scaffold_349 (157543-157371) | |
| 1-113, gnl|fr1|chrUn (97633142-97633302) | |
| 1-113, gnl|hg17|chr19 (51582183-51582355) | |
| 1-113, gnl|Hg17|chr19 (51582228-51582340) | |
| 1-113, gnl|mm7|chr7 (14770833-14770674) | |
| 1-113, gnl|Mm7|chr7 (14770784-14770673) | |
| 1-113, gnl|monDom2|scaffold_149 (2042285-2042124) | |
| 1-113, gnl|panTro1|chr20 (48858147-48858319) | |
| 1-113, gnl|rheMac2|chr19 (52743218-52743390) | |
| 1-113, gnl|rn3|chr1 (77426019-77425860) | |
| 1-113, gnl|tetNig1|chr16 (6267179-6267336) | |
| 1-113, gnl|xenTro1|scaffold_105 (1219547-1219713) | |
| 229-413, gnl|bosTau2|chr18 (49849945-49849761) | |
| 229-413, gnl|canFam2|chr1 (112340895-112340756) | |
| 229-413, gnl|danRer3|chr15 (27443380-27443224) | |
| 229-413, gnl|dasNov1|scaffold_349 (156406-156252) | |
| 229-413, gnl|fr1|chrUn (97633693-97633839) | |
| 229-413, gnl|hg17|chr19 (51583625-51583779) | |
| 229-413, gnl|Hg17|chr19 (51583631-51583828) | |
| 229-413, gnl|loxAfr1|scaffold_48198 (10317-10465) | |
| 229-413, gnl|mm7|chr7 (14769841-14769687) | |
| 229-413, gnl|Mm7|chr7 (14769829-14769636) | |
| 229-413, gnl|monDom2|scaffold_149 (2041706-2041565) | |
| 229-413, gnl|oryCun1|scaffold_212794 (42444-42308) | |
| 229-413, gnl|panTro1|chr20 (48859588-48859741) | |
| 229-413, gnl|rheMac2|chr19 (52744638-52744791) | |
| 229-413, gnl|rn3|chr1 (77424859-77424705) | |
| 229-413, gnl|tetNig1|chr16 (6267740-6267886) | |
| 229-413, gnl|xenTro1|scaffold_105 (1222088-1222232) | |
| 495-1013, gnl|bosTau2|chr18 (49848683-49848164) | |
| 495-1013, gnl|Hg17|chr19 (51585380-51585949) | |
| 495-1013, gnl|Mm7|chr7 (14768748-14768230) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| nms (0.213858) | |
| nep (0.183925) | |
| nje (0.16592) | |
| csp (0.161186) | |
| cov (0.132153) | |
| eje (0.0988338) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (0.213858) | |
| nep (0.183925) | |
| nje (0.16592) | |
| csp (0.161186) | |
| cov (0.132153) | |
| eje (0.0988338) |