Ss1.1-Pig4-TMW8056M17.5
|
CGCCTACAACCTGGAGGCCGGCCAGGGCGACTTCGCGTGCGGCCCGCACGGCTACGGCGC
CATCCCCGCCGCCGCCCCGCCGCCGCCCTACCCCTACCTCGTCACAGGGATACCCACCCA
CCACCCCAGGGTCTACAACATCCACAGTCGAAATGTCACCCGGTACCCTGCCAATTCCAT
CGTTGTTGTTGGAGGCTGCCCTGTCTGCAGGGTCGGGGTTCTGGAGGACTCCTTCACCTT
CCTGGGCATCTTCTTGGCCATCGTCCTGTTCCCCTTTGGGTTCATCTGCTGTTTCGCCTT
GAGGAAGCGAAGATGCCCCAACTGTGGCGCCAACTTTACTTAAAGGGAACTCCACACGTG
GCTTTCCTACTCCCAGCTCTCTTTTTCTAATGTAAATGTTGTGTACAATAGCTTTATTTG
ATTAATCTTCAGGACTGTTTTGTAAAGTGGTGGGTGGCTTGGGCGCCGCGAGGAGCCGGT
TTCGGGGAGTGTGGACGCGCAGCAGCAGCAGCACTGCTCCCAGGGTTAATGACCGCTCAG
TCAAGCACTGCTTTTATTTTTTGCAGTCTTCAATTTGAGAAAGGTGAGAAATACTGTTTT
AAATAAATGAGATCCATACCGTTAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CGCCTACAACCTGGAGGCCGGCCAGGGCGACTTCGCGTGCGGCCCGCACGGCTACGGCGC
CATCCCCGCCGCCGCCCCGCCGCCGCCCTACCCCTACCTCGTCACAGGGATACCCACCCA
CCACCCCAGGGTCTACAACATCCACAGTCGAAATGTCACCCGGTACCCTGCCAATTCCAT
CGTTGTTGTTGGAGGCTGCCCTGTCTGCAGGGTCGGGGTTCTGGAGGACTCCTTCACCTT
CCTGGGCATCTTCTTGGCCATCGTCCTGTTCCCCTTTGGGTTCATCTGCTGTTTCGCCTT
GAGGAAGCGAAGATGCCCCAACTGTGGCGCCAACTTTACTTAAAGGGAACTCCACACGTG
GCTTTCCTACTCCCAGCTCTCTTTTTCTAATGTAAATGTTGTGTACAATAGCTTTATTTG
ATTAATCTTCAGGACTGTTTTGTAAAGTGGTGGGTGGCTTGGGCGCCGCGAGGAGCCGGT
TTCGGGGAGTGTGGACGCGCAGCAGCAGCAGCACTGCTCCCAGGGTTAATGACCGCTCAG
TCAAGCACTGCTTTTATTTTTTGCAGTCTTCAATTTGAGAAAGGTGAGAAATACTGTTTT
AAATAAATGAGATCCATACCGTTAAAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-108, gnl|bosTau2|chr24 (42064252-42064356) |
|
1-108, gnl|canFam2|chr6 (14075094-14074962) |
|
1-108, gnl|danRer3|chr3 (45886972-45886875) |
|
1-108, gnl|echTel1|scaffold_21865 (1023-897) |
|
1-108, gnl|fr1|chrUn (121093179-121093275) |
|
1-108, gnl|hg17|chr7 (97555746-97555882) |
|
1-108, gnl|Hg17|chr7 (97555794-97555901) |
|
1-108, gnl|mm7|chr5 (143283388-143283530) |
|
1-108, gnl|Mm7|chr5 (143283442-143283549) |
|
1-108, gnl|oryCun1|scaffold_621 (2363-2264) |
|
1-108, gnl|panTro1|chr1 (99440281-99440405) |
|
1-108, gnl|rheMac2|chr3 (45460794-45460930) |
|
1-108, gnl|rn3|chr12 (10708552-10708409) |
|
1-108, gnl|tetNig1|chr3 (8824644-8824714) |
|
1-108, gnl|xenTro1|scaffold_6 (2013030-2012873) |
| |
|
199-623, gnl|bosTau2|chr24 (42070496-42070916) |
|
199-623, gnl|Hg17|chr7 (97565064-97565487) |
|
199-623, gnl|Mm7|chr5 (143292024-143292426) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-108, gnl|bosTau2|chr24 (42064252-42064356) |
|
1-108, gnl|canFam2|chr6 (14075094-14074962) |
|
1-108, gnl|danRer3|chr3 (45886972-45886875) |
|
1-108, gnl|echTel1|scaffold_21865 (1023-897) |
|
1-108, gnl|fr1|chrUn (121093179-121093275) |
|
1-108, gnl|hg17|chr7 (97555746-97555882) |
|
1-108, gnl|Hg17|chr7 (97555794-97555901) |
|
1-108, gnl|mm7|chr5 (143283388-143283530) |
|
1-108, gnl|Mm7|chr5 (143283442-143283549) |
|
1-108, gnl|oryCun1|scaffold_621 (2363-2264) |
|
1-108, gnl|panTro1|chr1 (99440281-99440405) |
|
1-108, gnl|rheMac2|chr3 (45460794-45460930) |
|
1-108, gnl|rn3|chr12 (10708552-10708409) |
|
1-108, gnl|tetNig1|chr3 (8824644-8824714) |
|
1-108, gnl|xenTro1|scaffold_6 (2013030-2012873) |
| |
|
199-623, gnl|bosTau2|chr24 (42070496-42070916) |
|
199-623, gnl|Hg17|chr7 (97565064-97565487) |
|
199-623, gnl|Mm7|chr5 (143292024-143292426) |
|
pla (4.41117) |
|
cje (0.991408) |
|
cst (0.560146) |
|
che (0.545256) |
|
cut (0.339847) |
|
cki (0.330469) |
|
cli (0.305623) |
|
sme (0.305437) |
|
cag (0.302389) |
|
nbm (0.297974) |
|
eje (0.296501) |
|
csk (0.281492) |
|
fce (0.271592) |
|
ece (0.229305) |
|
aor (0.195274) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
eli (0.151814) |
|
pty (0.142714) |
|
ssp (0.13552) |
|
lyg (0.133103) |
|
cly (0.120642) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
pla (4.41117) |
|
cje (0.991408) |
|
cst (0.560146) |
|
che (0.545256) |
|
cut (0.339847) |
|
cki (0.330469) |
|
cli (0.305623) |
|
sme (0.305437) |
|
cag (0.302389) |
|
nbm (0.297974) |
|
eje (0.296501) |
|
csk (0.281492) |
|
fce (0.271592) |
|
ece (0.229305) |
|
aor (0.195274) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
eli (0.151814) |
|
pty (0.142714) |
|
ssp (0.13552) |
|
lyg (0.133103) |
|
cly (0.120642) |
|
pgl (0.118483) |
|
ebs (0.118301) |
