Ss1.1-Pig4-TMW8056M19.5
|
CATTCTTCCAATAGTGCCTGTGAAGAATGCAGACGAAGCCGTAAAATTCATAAACGAACG
TGAAAAGCCCCTGGCTTTCTACGTATTTTCTCGTAACAATAAGCTCATCAAGCGGATGAT
CGAGGCGACGTCGAGCGGGGGTGTCACGGGCAACGACGTCATCATGCACTTCATGCTCAG
CTCCCTGCCCTTCGGAGGCGTGGGTTCCAGTGGGATGGGAGCTTATCACGGCAAGCACAG
CTTCGAAACCTTCTCCCACCTCCGGCCCTGCCTGTTAAAAAGTTTGAAGGGGGAAGGTGC
CAACAAGCTCAGGTACCCCCCCAACAGCCAGTCCAAGGTGGACTGGGCCAAGTTCTTCTT
CTTGAAGCGGGTCAGCAAAGGGAGACTGGGCCTCCTGTTCCTCGCGCTGCTGGGCGTCGT
GCTGGCCGTGCTCCTCAAGGCTGGATACCGCTGAAGGAGCTGCCTGTGCTGCCGACGCCT
TGTCTCTTCCATTTTTCTATTAAACAGCTAATGAACCAATAATTTTTAAATCCTAACAAA
AATAGTAGAAGATACACAAACGCACCGTGATGGAACCTGAGAGTCACTGCCACTCACTGT
CTTTCCAGCCAGAGCCCCACGCCCCCACCCAGGGCTAAGGGTCCTGGGAGGACCCCATCC
CGCTGGGTCCCGGGCCCTGGAGCCCTGGGCTGGGGAGCAGCGCCCACTCCCCCCCCCCGC
GAAGCATCACCCGGAAACCTTCCAGAGCCAGCCCCGCCCTGGTTTCCAGGCCTTCCCAGC
CTCCATTCCAGGTTCGAGGCCCTCGAGCTAGGGTCGGGCTGGGGTCCCCGTCGCTCACCA
TTGAGACTTGAAGACCAGACCCGCGGGCATCTCCCTTTCTCGTCTCTGCTCCGTCCTGTC
CTGTGCTTGGGGTGCGACGGTCCCTTGTGGCTGTCCACACTCGGTTTCCGACGTCGCTAG
AGCGTCCAGTGCGTCCTAAGGCTTCCTGGAAGACAGCGGCCAACGCGTGCACGCGGCTTT
CATCTGCCCTCCTCAAGTGGAGCTGCTGCAGAATTTAAACCCTAACGTGCATTTTAACGC
TGTAACAAAAGTGCTTGTAAACTCTGCGAGGACAGCGCGGGCCCCACGGAAGGGGACAGA
AGACAGGAAGCGCCGGGGTTCTTTAGCCAAATGGAAAGTCTCACAAAGAGCCTGGGGCGG
GTCCTGGCCACAGGCCCCACTTCCTCCACCCCCAACCCCTACACGCACGCATGCACGTGC
TTGGCAAAATCCACCACTGAATCGGCAAATGTGACTCACTTTACAGGACGTATAATTCAC
TCTGGGGGATGAGTGTGTTTTGCGTCTCATTAGGCGTCTGTCTGGAGGATGTTGCCTCAC
AGGGCGAGGTGTCAAGAATTAGTCACGAGGCTGGTTTAGGAACAAGCTGCTGAGACGGGC
TCCACCTGTCAGAAGCACAAGGCATCTCAGACAAAACTCCACCACGGAATGTTCATTTGA
TACATTCGATTGTACATCACTTTCTAGCTAAACGATACTGACTTGTCTACTAGTAGATTC
TGCTTCGAAATAAATACATTTAGTGAAATTGCCATGAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CATTCTTCCAATAGTGCCTGTGAAGAATGCAGACGAAGCCGTAAAATTCATAAACGAACG
TGAAAAGCCCCTGGCTTTCTACGTATTTTCTCGTAACAATAAGCTCATCAAGCGGATGAT
CGAGGCGACGTCGAGCGGGGGTGTCACGGGCAACGACGTCATCATGCACTTCATGCTCAG
CTCCCTGCCCTTCGGAGGCGTGGGTTCCAGTGGGATGGGAGCTTATCACGGCAAGCACAG
CTTCGAAACCTTCTCCCACCTCCGGCCCTGCCTGTTAAAAAGTTTGAAGGGGGAAGGTGC
CAACAAGCTCAGGTACCCCCCCAACAGCCAGTCCAAGGTGGACTGGGCCAAGTTCTTCTT
CTTGAAGCGGGTCAGCAAAGGGAGACTGGGCCTCCTGTTCCTCGCGCTGCTGGGCGTCGT
GCTGGCCGTGCTCCTCAAGGCTGGATACCGCTGAAGGAGCTGCCTGTGCTGCCGACGCCT
TGTCTCTTCCATTTTTCTATTAAACAGCTAATGAACCAATAATTTTTAAATCCTAACAAA
AATAGTAGAAGATACACAAACGCACCGTGATGGAACCTGAGAGTCACTGCCACTCACTGT
CTTTCCAGCCAGAGCCCCACGCCCCCACCCAGGGCTAAGGGTCCTGGGAGGACCCCATCC
CGCTGGGTCCCGGGCCCTGGAGCCCTGGGCTGGGGAGCAGCGCCCACTCCCCCCCCCCGC
GAAGCATCACCCGGAAACCTTCCAGAGCCAGCCCCGCCCTGGTTTCCAGGCCTTCCCAGC
CTCCATTCCAGGTTCGAGGCCCTCGAGCTAGGGTCGGGCTGGGGTCCCCGTCGCTCACCA
TTGAGACTTGAAGACCAGACCCGCGGGCATCTCCCTTTCTCGTCTCTGCTCCGTCCTGTC
CTGTGCTTGGGGTGCGACGGTCCCTTGTGGCTGTCCACACTCGGTTTCCGACGTCGCTAG
AGCGTCCAGTGCGTCCTAAGGCTTCCTGGAAGACAGCGGCCAACGCGTGCACGCGGCTTT
CATCTGCCCTCCTCAAGTGGAGCTGCTGCAGAATTTAAACCCTAACGTGCATTTTAACGC
TGTAACAAAAGTGCTTGTAAACTCTGCGAGGACAGCGCGGGCCCCACGGAAGGGGACAGA
AGACAGGAAGCGCCGGGGTTCTTTAGCCAAATGGAAAGTCTCACAAAGAGCCTGGGGCGG
GTCCTGGCCACAGGCCCCACTTCCTCCACCCCCAACCCCTACACGCACGCATGCACGTGC
TTGGCAAAATCCACCACTGAATCGGCAAATGTGACTCACTTTACAGGACGTATAATTCAC
TCTGGGGGATGAGTGTGTTTTGCGTCTCATTAGGCGTCTGTCTGGAGGATGTTGCCTCAC
AGGGCGAGGTGTCAAGAATTAGTCACGAGGCTGGTTTAGGAACAAGCTGCTGAGACGGGC
TCCACCTGTCAGAAGCACAAGGCATCTCAGACAAAACTCCACCACGGAATGTTCATTTGA
TACATTCGATTGTACATCACTTTCTAGCTAAACGATACTGACTTGTCTACTAGTAGATTC
TGCTTCGAAATAAATACATTTAGTGAAATTGCCATGAAAAAAAAAAAA
|
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203-482, gnl|bosTau2|chr19 (24647208-24646934) |
|
203-482, gnl|canFam2|chr5 (43521552-43521296) |
|
203-482, gnl|danRer3|chr15 (25310698-25310953) |
|
203-482, gnl|dasNov1|scaffold_178415 (4752-4478) |
|
203-482, gnl|echTel1|scaffold_292000 (95235-94975) |
|
203-482, gnl|fr1|chrUn (44093641-44093368) |
|
203-482, gnl|galGal2|chr19 (6418957-6419212) |
|
203-482, gnl|hg17|chr17 (19515618-19515891) |
|
203-482, gnl|Hg17|chr17 (19515625-19515908) |
|
203-482, gnl|loxAfr1|scaffold_21252 (28801-29069) |
|
203-482, gnl|mm7|chr11 (61330665-61330392) |
|
203-482, gnl|Mm7|chr11 (61330656-61330387) |
|
203-482, gnl|monDom2|scaffold_86 (4777203-4776953) |
|
203-482, gnl|panTro1|chr19 (19843544-19843817) |
|
203-482, gnl|rheMac2|chr16 (19185550-19185823) |
|
203-482, gnl|rn3|chr10 (47418214-47417941) |
|
203-482, gnl|tetNig1|chr7 (7528689-7528443) |
|
203-482, gnl|xenTro1|scaffold_38 (1189042-1188792) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
203-482, gnl|bosTau2|chr19 (24647208-24646934) |
|
203-482, gnl|canFam2|chr5 (43521552-43521296) |
|
203-482, gnl|danRer3|chr15 (25310698-25310953) |
|
203-482, gnl|dasNov1|scaffold_178415 (4752-4478) |
|
203-482, gnl|echTel1|scaffold_292000 (95235-94975) |
|
203-482, gnl|fr1|chrUn (44093641-44093368) |
|
203-482, gnl|galGal2|chr19 (6418957-6419212) |
|
203-482, gnl|hg17|chr17 (19515618-19515891) |
|
203-482, gnl|Hg17|chr17 (19515625-19515908) |
|
203-482, gnl|loxAfr1|scaffold_21252 (28801-29069) |
|
203-482, gnl|mm7|chr11 (61330665-61330392) |
|
203-482, gnl|Mm7|chr11 (61330656-61330387) |
|
203-482, gnl|monDom2|scaffold_86 (4777203-4776953) |
|
203-482, gnl|panTro1|chr19 (19843544-19843817) |
|
203-482, gnl|rheMac2|chr16 (19185550-19185823) |
|
203-482, gnl|rn3|chr10 (47418214-47417941) |
|
203-482, gnl|tetNig1|chr7 (7528689-7528443) |
|
203-482, gnl|xenTro1|scaffold_38 (1189042-1188792) |
|
sto (1.07894) |
|
cje (0.991408) |
|
pgl (0.473934) |
|
cli (0.458435) |
|
lun (0.451467) |
|
cst (0.420109) |
|
hea (0.408998) |
|
che (0.408942) |
|
nmm (0.398406) |
|
cov (0.396458) |
|
col (0.390016) |
|
nlu (0.383362) |
|
eep (0.367692) |
|
sag (0.36543) |
|
fbs (0.350693) |
|
vin (0.332557) |
|
eje (0.296501) |
|
cte (0.29274) |
|
csk (0.281492) |
|
cga (0.279096) |
|
ssp (0.271039) |
|
bla (0.248694) |
|
cbe (0.239234) |
|
nbm (0.198649) |
|
jej (0.197844) |
|
cmu (0.186393) |
|
gul (0.177588) |
|
ton (0.1755) |
|
sin (0.174948) |
|
rec (0.17307) |
|
cki (0.165235) |
|
nco (0.161734) |
|
mga (0.160205) |
|
cag (0.151194) |
|
pty (0.142714) |
|
pla (0.133672) |
|
lyg (0.133103) |
|
kid (0.129735) |
|
sug (0.127291) |
|
tra (0.123092) |
|
sto (1.07894) |
|
cje (0.991408) |
|
pgl (0.473934) |
|
cli (0.458435) |
|
lun (0.451467) |
|
cst (0.420109) |
|
hea (0.408998) |
|
che (0.408942) |
|
nmm (0.398406) |
|
cov (0.396458) |
|
col (0.390016) |
|
nlu (0.383362) |
|
eep (0.367692) |
|
sag (0.36543) |
|
fbs (0.350693) |
|
vin (0.332557) |
|
eje (0.296501) |
|
cte (0.29274) |
|
csk (0.281492) |
|
cga (0.279096) |
|
ssp (0.271039) |
|
bla (0.248694) |
|
cbe (0.239234) |
|
nbm (0.198649) |
|
jej (0.197844) |
|
cmu (0.186393) |
|
gul (0.177588) |
|
ton (0.1755) |
|
sin (0.174948) |
|
rec (0.17307) |
|
cki (0.165235) |
|
nco (0.161734) |
|
mga (0.160205) |
|
cag (0.151194) |
|
pty (0.142714) |
|
pla (0.133672) |
|
lyg (0.133103) |
|
kid (0.129735) |
|
sug (0.127291) |
|
tra (0.123092) |
