Non-Coding RNA Search

Ss1.1-Pig4-TMW8056M21.5.5

Sequence:


               
               CACCCACTCCCTGCTCGTGGGGCGCTCCCCAGTCCGCCGCCCGCCTCATCGCATTCTCCT
CTTGTCTCCGTAGCTTCCGCCCTGCGCTGCCAGTCTCCTACCTGCAGGCCGAGCTGGCCT
TCGAGGGCGAGGCCGCCTGCCGGGCCTTCCTAGAGCCCCTAGGCCTGGCCTACACGGGCC
CGGACAACTCCAGCATCGACTGCCGCCTCAGCCTGGCGCAGCTGTCAGCCTTCTGAGCAC
CAGCGCCGACGGGGGCGGGGGGCAGGGCTGCAGCCCCCCAGCACCGCCTTGGCACATTTT
GTTTTTGAGCCATGGACTTGGGTTGTAAATTAATTTGTGGGGATTGGGCTCCAGGACGAG
CCACCACCCCTGCCCCCGTTTTCCCACCGGGGAGTCTGTACAGAGATGTTTTCTACATTT
TTATTTTTTGCCTCAGAGGGATGGGATGGGATGGGATGGGATTTGGGGGGGCAGCGGAGG
GCTGGGGGCAGGGTCTGTGGGCTGCTCTGTGTCCGCCTTGCACCTCCACTAATGCTGTCT
CAGTGTTTTTTCTCTCTCTCTCTCGAGCTTGTACTCCGGTACCGACCCGGCACCCTGGCC
CATCCCATGCCGGGGGGGCCAGTGGAAGAGGACAGGCCGCTCCGCCCGTGCCCGCCTGCG
GCGGGGGCACCAGCACACCAGCCCGCCGCCCGCCGCCCCATCTGCCTCACCACAGACTCT
TGTTGCCCAGCCCTCCGGGGCCTCAGTGTTTGGGGCGAGGGGAGCCGCGTAGAGACTGTG
CCCTGCCCTCGGCCCCCGACCCCAGAAATGCCAACACCTCTCCACCACCAGATCCACGCC
ACCATGCTGCACTGAGGACTCCGGAGGCCATCGCGGGACCTGACGGCCGGGCCGCCTCGT
CTGCAGTTGTATTGAGTTGTCTCCGTGTCCCCTTCTCCCTCTACCCCCAATGTTTCTCTG
GTTTTTTTTTCCCTCCCTCCCCCTCCTCCCCTGCTCCTCCCTTGGTTCAGCACAGGTAAA
ACGGTTACCCTCCCGCCCTGCCTCATGGATCACCAGCTCACGTCATGTTTCCTCCTCTTT
TCTTTTTGTGTGTGTTTATTTAAGTTATTTTTTTTCTTCCTCCCCTTTTCTTTTCCGTCC
TCCCTCCCTCTTCTGCCATGTAACTGGAGGATGTGCAATGAGTTTGCGAACAGCTGGACT
GTCAGGCTGCTTTTTTTCCAGATGTTCCTCCTCTGCCTCCCCTCCCCTCCTCTCCCCTCC
CCTTTCCTTCCTTCACTCTTTCCTTGGAGCACTGAGCGCCATTTGGAAGCTTGAGACCCA
AAATTAAAGAGAGAGAGCGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
TCTCCTTGGGCGGATCAGGTCCTGGCCCCTTTTTCTTTCAGGGTTGAGATCCCAGAGGGA
TCTCAGCCACAGTCTGGTAGGCGGCCCCTGCCCTCCCCACACGGCACAGGCAGAGGTGCC
TCAGGGGCTGGCTCCCCAGCTCCTGCCTTGGGCTGAAGCCGGGCTTGGGGAGGCAGACCT
GGGAACCCTGGGGCACCTTGAGCAGCGTGAGGTGCGGGTGTAGGCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCCACTCCCTGCTCGTGGGGCGCTCCCCAGTCCGCCGCCCGCCTCATCGCATTCTCCT
CTTGTCTCCGTAGCTTCCGCCCTGCGCTGCCAGTCTCCTACCTGCAGGCCGAGCTGGCCT
TCGAGGGCGAGGCCGCCTGCCGGGCCTTCCTAGAGCCCCTAGGCCTGGCCTACACGGGCC
CGGACAACTCCAGCATCGACTGCCGCCTCAGCCTGGCGCAGCTGTCAGCCTTCTGAGCAC
CAGCGCCGACGGGGGCGGGGGGCAGGGCTGCAGCCCCCCAGCACCGCCTTGGCACATTTT
GTTTTTGAGCCATGGACTTGGGTTGTAAATTAATTTGTGGGGATTGGGCTCCAGGACGAG
CCACCACCCCTGCCCCCGTTTTCCCACCGGGGAGTCTGTACAGAGATGTTTTCTACATTT
TTATTTTTTGCCTCAGAGGGATGGGATGGGATGGGATGGGATTTGGGGGGGCAGCGGAGG
GCTGGGGGCAGGGTCTGTGGGCTGCTCTGTGTCCGCCTTGCACCTCCACTAATGCTGTCT
CAGTGTTTTTTCTCTCTCTCTCTCGAGCTTGTACTCCGGTACCGACCCGGCACCCTGGCC
CATCCCATGCCGGGGGGGCCAGTGGAAGAGGACAGGCCGCTCCGCCCGTGCCCGCCTGCG
GCGGGGGCACCAGCACACCAGCCCGCCGCCCGCCGCCCCATCTGCCTCACCACAGACTCT
TGTTGCCCAGCCCTCCGGGGCCTCAGTGTTTGGGGCGAGGGGAGCCGCGTAGAGACTGTG
CCCTGCCCTCGGCCCCCGACCCCAGAAATGCCAACACCTCTCCACCACCAGATCCACGCC
ACCATGCTGCACTGAGGACTCCGGAGGCCATCGCGGGACCTGACGGCCGGGCCGCCTCGT
CTGCAGTTGTATTGAGTTGTCTCCGTGTCCCCTTCTCCCTCTACCCCCAATGTTTCTCTG
GTTTTTTTTTCCCTCCCTCCCCCTCCTCCCCTGCTCCTCCCTTGGTTCAGCACAGGTAAA
ACGGTTACCCTCCCGCCCTGCCTCATGGATCACCAGCTCACGTCATGTTTCCTCCTCTTT
TCTTTTTGTGTGTGTTTATTTAAGTTATTTTTTTTCTTCCTCCCCTTTTCTTTTCCGTCC
TCCCTCCCTCTTCTGCCATGTAACTGGAGGATGTGCAATGAGTTTGCGAACAGCTGGACT
GTCAGGCTGCTTTTTTTCCAGATGTTCCTCCTCTGCCTCCCCTCCCCTCCTCTCCCCTCC
CCTTTCCTTCCTTCACTCTTTCCTTGGAGCACTGAGCGCCATTTGGAAGCTTGAGACCCA
AAATTAAAGAGAGAGAGCGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
TCTCCTTGGGCGGATCAGGTCCTGGCCCCTTTTTCTTTCAGGGTTGAGATCCCAGAGGGA
TCTCAGCCACAGTCTGGTAGGCGGCCCCTGCCCTCCCCACACGGCACAGGCAGAGGTGCC
TCAGGGGCTGGCTCCCCAGCTCCTGCCTTGGGCTGAAGCCGGGCTTGGGGAGGCAGACCT
GGGAACCCTGGGGCACCTTGAGCAGCGTGAGGTGCGGGTGTAGGCCCC

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               111-227, + strand, RNAz p=0.685394
               

               
               310-428, + strand, RNAz p=0.832309
               

               
               1239-1356, - strand, RNAz p=0.999337
               

               
               1429-1608, - strand, RNAz p=0.951324

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               111-227, + strand, RNAz p=0.685394
               

               
               310-428, + strand, RNAz p=0.832309
               

               
               1239-1356, - strand, RNAz p=0.999337
               

               
               1429-1608, - strand, RNAz p=0.951324

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               1551-1636, + strand, RNAmicro p=0.963458

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1551-1636, + strand, RNAmicro p=0.963458

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               3' of NM_052925, +
               

               
               5' of NM_198988, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_052925, +
               

               
               5' of NM_198988, -

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               111-273, gnl|bosTau2|chr18 (55364748-55364587)
               

               
               111-273, gnl|canFam2|chr1 (105921760-105921633)
               

               
               111-273, gnl|danRer3|chr16 (6758568-6758443)
               

               
               111-273, gnl|dasNov1|scaffold_25627 (11726-11853)
               

               
               111-273, gnl|fr1|chrUn (252655257-252655381)
               

               
               111-273, gnl|hg17|chr19 (59663796-59663923)
               

               
               111-273, gnl|Hg17|chr19 (59663795-59663956)
               

               
               111-273, gnl|mm7|chr7 (3705005-3705132)
               

               
               111-273, gnl|Mm7|chr7 (3705004-3705164)
               

               
               111-273, gnl|panTro1|chr20 (57112340-57112467)
               

               
               111-273, gnl|rheMac2|chr19 (60609560-60609687)
               

               
               111-273, gnl|rn3|chr1 (69532399-69532272)
               

               
               111-273, gnl|tetNig1|chr8 (8489372-8489496)
               

               
               111-273, gnl|xenTro1|scaffold_250 (45281-45154)
               


               
               292-1608, gnl|bosTau2|chr18 (55364590-55363363)
               

               
               292-1608, gnl|Hg17|chr19 (59663953-59665263)
               

               
               292-1608, gnl|Mm7|chr7 (3705161-3706424)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               111-273, gnl|bosTau2|chr18 (55364748-55364587)
               

               
               111-273, gnl|canFam2|chr1 (105921760-105921633)
               

               
               111-273, gnl|danRer3|chr16 (6758568-6758443)
               

               
               111-273, gnl|dasNov1|scaffold_25627 (11726-11853)
               

               
               111-273, gnl|fr1|chrUn (252655257-252655381)
               

               
               111-273, gnl|hg17|chr19 (59663796-59663923)
               

               
               111-273, gnl|Hg17|chr19 (59663795-59663956)
               

               
               111-273, gnl|mm7|chr7 (3705005-3705132)
               

               
               111-273, gnl|Mm7|chr7 (3705004-3705164)
               

               
               111-273, gnl|panTro1|chr20 (57112340-57112467)
               

               
               111-273, gnl|rheMac2|chr19 (60609560-60609687)
               

               
               111-273, gnl|rn3|chr1 (69532399-69532272)
               

               
               111-273, gnl|tetNig1|chr8 (8489372-8489496)
               

               
               111-273, gnl|xenTro1|scaffold_250 (45281-45154)
               


               
               292-1608, gnl|bosTau2|chr18 (55364590-55363363)
               

               
               292-1608, gnl|Hg17|chr19 (59663953-59665263)
               

               
               292-1608, gnl|Mm7|chr7 (3705161-3706424)

Expressed library(ies): 25 entry(ies)

More info

Expressed library(ies): 25 entry(ies)

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               pla (0.534688)
               

               
               lnt (0.426925)
               

               
               nlu (0.383362)
               

               
               fty (0.351679)
               

               
               sme (0.305437)
               

               
               cst (0.280073)
               

               
               fce (0.271592)
               

               
               ute (0.265569)
               

               
               eep (0.245128)
               

               
               med (0.232504)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               cmu (0.186393)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.534688)
               

               
               lnt (0.426925)
               

               
               nlu (0.383362)
               

               
               fty (0.351679)
               

               
               sme (0.305437)
               

               
               cst (0.280073)
               

               
               fce (0.271592)
               

               
               ute (0.265569)
               

               
               eep (0.245128)
               

               
               med (0.232504)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               cmu (0.186393)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	111-227, + strand, RNAz p=0.685394
	310-428, + strand, RNAz p=0.832309
	1239-1356, - strand, RNAz p=0.999337
	1429-1608, - strand, RNAz p=0.951324

	111-273, gnl\|bosTau2\|chr18 (55364748-55364587)
	111-273, gnl\|canFam2\|chr1 (105921760-105921633)
	111-273, gnl\|danRer3\|chr16 (6758568-6758443)
	111-273, gnl\|dasNov1\|scaffold_25627 (11726-11853)
	111-273, gnl\|fr1\|chrUn (252655257-252655381)
	111-273, gnl\|hg17\|chr19 (59663796-59663923)
	111-273, gnl\|Hg17\|chr19 (59663795-59663956)
	111-273, gnl\|mm7\|chr7 (3705005-3705132)
	111-273, gnl\|Mm7\|chr7 (3705004-3705164)
	111-273, gnl\|panTro1\|chr20 (57112340-57112467)
	111-273, gnl\|rheMac2\|chr19 (60609560-60609687)
	111-273, gnl\|rn3\|chr1 (69532399-69532272)
	111-273, gnl\|tetNig1\|chr8 (8489372-8489496)
	111-273, gnl\|xenTro1\|scaffold_250 (45281-45154)

	292-1608, gnl\|bosTau2\|chr18 (55364590-55363363)
	292-1608, gnl\|Hg17\|chr19 (59663953-59665263)
	292-1608, gnl\|Mm7\|chr7 (3705161-3706424)

	pla (0.534688)
	lnt (0.426925)
	nlu (0.383362)
	fty (0.351679)
	sme (0.305437)
	cst (0.280073)
	fce (0.271592)
	ute (0.265569)
	eep (0.245128)
	med (0.232504)
	ecc (0.23007)
	ece (0.229305)
	mas (0.210305)
	cmu (0.186393)
	ill (0.175593)
	ton (0.1755)
	fbs (0.175346)
	fhi (0.169578)
	cag (0.151194)
	hyp (0.142837)
	pty (0.142714)
	ese (0.126502)
	eru (0.120048)
	nbm (0.0993246)
	eje (0.0988338)