Non-Coding RNA Search

Ss1.1-Pig4-TMW8056M22.5

Sequence:


               
               GCGGCTGTGAGCGCCGAGGGCAAGGCGGTGCAGACCGCCATCCTGGGCGGCGCCATGAGC
GTGGTGTCGGCCTGTGTGCTCCTGACCCAGTGCCTCAGGGATCTGGCGCAGCACCCCGAC
GGGGGCGCCAAGATGTCGGACCACAGGGAGAGGCTGAGGAACTCGGCCTGCGCCGTGTCT
GAAGGCTGCACCCTGCTATCTCAGGCTTTAAGGGAGAGGTCTTCGCCCAGGACTTTACCG
CCAGTGAATTCCAATTCTGTGAATTAGCATCCCCCCCTCCATCCCCTTCCTCCACCCCCA
GGCTAAAGGAAGATACTTATTCTCTGCCCCTCTCCATTTATACCAAAGAAATCAAAGGTG
AAGCTTCACCCCCTCCCTTCTCCCCCATGTTCAGTGCTCTAGAGGAAGCTTCCAGAAGGT
TGGGCCATGCATACCCTTTACAGGAGCACTTGGAGGGCCCTCAGTGTCCACCAGCCCAAA
CTGTAGGGACCAGGAGCCGGATGTGTAATCTGCTGGTTGCGGTATTACCCGCACCCCTTC
CCTCCCCCAGCTCCTCCTCCGGAATTCCTCACCTAAATCTTATTGTTCATTGGCCAGGAA
GGAGGTCATGGGTTCATTTCTCTTTTTTTGGTCTTTTTTCCCCCCCCTGATTAAAAAGAA
AGGTTACCTCAGTTTTCACTCCTTAGACATGGATGTAGCTACCTTTTTTGTATGTTGGTA
TTTTTTTAAGCAATCGTGATGGATTAGGCGTATCCTTGGTGTGGAAAGAGTATGACTTTG
CCATGTGATTTGCAAATGGGGGGGGAAGCTACTGTGAGTGTGTGTTTTATTTTTTAATTT
ACACTATAGAGTGATTTTTCCCCCCTCCAATGTCAAGTTTTTACCTTGCATGTACTGGAG
TATTTATTTCATCTATTAAAATGTTATGTTTCTCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCTGTGAGCGCCGAGGGCAAGGCGGTGCAGACCGCCATCCTGGGCGGCGCCATGAGC
GTGGTGTCGGCCTGTGTGCTCCTGACCCAGTGCCTCAGGGATCTGGCGCAGCACCCCGAC
GGGGGCGCCAAGATGTCGGACCACAGGGAGAGGCTGAGGAACTCGGCCTGCGCCGTGTCT
GAAGGCTGCACCCTGCTATCTCAGGCTTTAAGGGAGAGGTCTTCGCCCAGGACTTTACCG
CCAGTGAATTCCAATTCTGTGAATTAGCATCCCCCCCTCCATCCCCTTCCTCCACCCCCA
GGCTAAAGGAAGATACTTATTCTCTGCCCCTCTCCATTTATACCAAAGAAATCAAAGGTG
AAGCTTCACCCCCTCCCTTCTCCCCCATGTTCAGTGCTCTAGAGGAAGCTTCCAGAAGGT
TGGGCCATGCATACCCTTTACAGGAGCACTTGGAGGGCCCTCAGTGTCCACCAGCCCAAA
CTGTAGGGACCAGGAGCCGGATGTGTAATCTGCTGGTTGCGGTATTACCCGCACCCCTTC
CCTCCCCCAGCTCCTCCTCCGGAATTCCTCACCTAAATCTTATTGTTCATTGGCCAGGAA
GGAGGTCATGGGTTCATTTCTCTTTTTTTGGTCTTTTTTCCCCCCCCTGATTAAAAAGAA
AGGTTACCTCAGTTTTCACTCCTTAGACATGGATGTAGCTACCTTTTTTGTATGTTGGTA
TTTTTTTAAGCAATCGTGATGGATTAGGCGTATCCTTGGTGTGGAAAGAGTATGACTTTG
CCATGTGATTTGCAAATGGGGGGGGAAGCTACTGTGAGTGTGTGTTTTATTTTTTAATTT
ACACTATAGAGTGATTTTTCCCCCCTCCAATGTCAAGTTTTTACCTTGCATGTACTGGAG
TATTTATTTCATCTATTAAAATGTTATGTTTCTCAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9EPQ5_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9EPQ5_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               781-936, - strand, RNAz p=0.886299

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               781-936, - strand, RNAz p=0.886299

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               508-936, gnl|bosTau2|chr21 (19303418-19303837)
               

               
               508-936, gnl|Hg17|chr15 (79082991-79083399)
               

               
               508-936, gnl|Mm7|chr7 (79803471-79803099)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               508-936, gnl|bosTau2|chr21 (19303418-19303837)
               

               
               508-936, gnl|Hg17|chr15 (79082991-79083399)
               

               
               508-936, gnl|Mm7|chr7 (79803471-79803099)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               fce (0.543183)
               

               
               cst (0.280073)
               

               
               ece (0.229305)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               clu (0.119646)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               cst (0.280073)
               

               
               ece (0.229305)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               clu (0.119646)

	508-936, gnl\|bosTau2\|chr21 (19303418-19303837)
	508-936, gnl\|Hg17\|chr15 (79082991-79083399)
	508-936, gnl\|Mm7\|chr7 (79803471-79803099)

	fce (0.543183)
	cst (0.280073)
	ece (0.229305)
	fty (0.17584)
	duo (0.172801)
	hlv (0.139256)
	nca (0.136874)
	ssp (0.13552)
	clu (0.119646)