Ss1.1-Pig4-TMW8056N06.3
|
GCGGCCGAGGGTCCGGGGGCCGCCGGAGGCGGCGAGCGCGAGCCGAGGGCAGCCGGCCTC
CCGCGGCCGCCAAGCCCGGGAGAGCGCGCCGGCCGGAGCCATGTCGGTGAACATGGATGA
GCTGCGGCACCAGGTCATGATCAACCAGTTCGTGCTGGCCGCGGGCTGCGCGGCCGACCA
GGCGAAGCAGCTGCTGCAGGCGGCGCACTGGCAGTTCGAGACCGCCCTGAGCACGTTTTT
CCAAGAAACCAACATTCCCAACAGCCACCACCACCACCAGATGATGGGCACCCCCAGCAA
CACACCGGCCACGCCGCCCAACTTCCCCGACGCCCTGGCTATGTTCTCCAAGCTCCGTGC
CTCCGAGGGCCTGCAGAACGGCAGCAGCCCCATGACCGCCGTGGCCTGCTCCCCTCCTGC
CAACTTCAGCCCCTTCTGGGCCTCGTCCCCGCCCAGCCACCAGGCCGCCTGGATCCCGCC
CTCCTCCCCCACGGCCCACAGCTTCCACCACCTCCACCACCCACAGCCCACGTGGCCGCC
TGGAGCCCAGCAGGCGGGCCCCCCGCAGAAAGCCATGGCTGCGGTGGACGGCCAGAGATG
AGACTCGATGCCGCCGGGCGCGGGGCTGCAGCCGGGGCCGTCGAGGCCGTCGGGGGAGCT
GGGGCGGGCGGGGGTTTCCTGAAGATCGCACTGGAAGATTTTATAAGAGAATTTTTGTGG
GTGGGGGGGCAGTAAACGTCCTGAGCCACTTGGGTCCTTCAGGAGTTTCTCTTCAGGCAA
GTTTTTTTTTTTTCTCTTTTTAATATATAACGATAATATATATGAATATATAAAAATAAC
TAATGTATGTGAGTATGGGGCTGGCTGACAGGGTGTTGTCCGCGGGGAAGGGTCGGGATC
CTCCCCCCAGCCCCAGGGCAGGTGCTGGAAAGCCAGGGGGCCCGAACTTGGGGTCTGCTA
GCTGCCTCCTCTCAGAGGTCACACCTTCTAGAAGCAGAAGGATGATCACCCCTCCACTCC
AATGAGGGGTTGCAGGAGGGGCTCCCAGAGGTGCCGGTGGCCGCAGGTGGGGGGCTCTTG
GCCATTGAGAGGCTCTCCCCACCCCGCTGGTGGCTGGCTCCTCTGTCACTCTCCAGTTCT
TGTCACCTCTCCTGGTGTCGCCCGTCTCCAGCTAGGGGTGCAGGGCTTGTGTGGGACTCA
AGAGCCGGCTCGGCCAAAGGCCCAGGCTCTGCTGGCGGGGGCCTGACCCCGCAGCCACCC
TGCCTCTCTTCCTCTGTGTCTGCGGCGATGGTGGAGAGCTTTCCTTTGGGTTTTGGTCCC
CAGTCAATCATCTCACCAGGGTGAAATTTTAATTTAAAACTTAAAAGAGACTTTTCTAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCGGCCGAGGGTCCGGGGGCCGCCGGAGGCGGCGAGCGCGAGCCGAGGGCAGCCGGCCTC
CCGCGGCCGCCAAGCCCGGGAGAGCGCGCCGGCCGGAGCCATGTCGGTGAACATGGATGA
GCTGCGGCACCAGGTCATGATCAACCAGTTCGTGCTGGCCGCGGGCTGCGCGGCCGACCA
GGCGAAGCAGCTGCTGCAGGCGGCGCACTGGCAGTTCGAGACCGCCCTGAGCACGTTTTT
CCAAGAAACCAACATTCCCAACAGCCACCACCACCACCAGATGATGGGCACCCCCAGCAA
CACACCGGCCACGCCGCCCAACTTCCCCGACGCCCTGGCTATGTTCTCCAAGCTCCGTGC
CTCCGAGGGCCTGCAGAACGGCAGCAGCCCCATGACCGCCGTGGCCTGCTCCCCTCCTGC
CAACTTCAGCCCCTTCTGGGCCTCGTCCCCGCCCAGCCACCAGGCCGCCTGGATCCCGCC
CTCCTCCCCCACGGCCCACAGCTTCCACCACCTCCACCACCCACAGCCCACGTGGCCGCC
TGGAGCCCAGCAGGCGGGCCCCCCGCAGAAAGCCATGGCTGCGGTGGACGGCCAGAGATG
AGACTCGATGCCGCCGGGCGCGGGGCTGCAGCCGGGGCCGTCGAGGCCGTCGGGGGAGCT
GGGGCGGGCGGGGGTTTCCTGAAGATCGCACTGGAAGATTTTATAAGAGAATTTTTGTGG
GTGGGGGGGCAGTAAACGTCCTGAGCCACTTGGGTCCTTCAGGAGTTTCTCTTCAGGCAA
GTTTTTTTTTTTTCTCTTTTTAATATATAACGATAATATATATGAATATATAAAAATAAC
TAATGTATGTGAGTATGGGGCTGGCTGACAGGGTGTTGTCCGCGGGGAAGGGTCGGGATC
CTCCCCCCAGCCCCAGGGCAGGTGCTGGAAAGCCAGGGGGCCCGAACTTGGGGTCTGCTA
GCTGCCTCCTCTCAGAGGTCACACCTTCTAGAAGCAGAAGGATGATCACCCCTCCACTCC
AATGAGGGGTTGCAGGAGGGGCTCCCAGAGGTGCCGGTGGCCGCAGGTGGGGGGCTCTTG
GCCATTGAGAGGCTCTCCCCACCCCGCTGGTGGCTGGCTCCTCTGTCACTCTCCAGTTCT
TGTCACCTCTCCTGGTGTCGCCCGTCTCCAGCTAGGGGTGCAGGGCTTGTGTGGGACTCA
AGAGCCGGCTCGGCCAAAGGCCCAGGCTCTGCTGGCGGGGGCCTGACCCCGCAGCCACCC
TGCCTCTCTTCCTCTGTGTCTGCGGCGATGGTGGAGAGCTTTCCTTTGGGTTTTGGTCCC
CAGTCAATCATCTCACCAGGGTGAAATTTTAATTTAAAACTTAAAAGAGACTTTTCTAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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1-198, gnl|bosTau2|chr19 (49377003-49376804) |
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1-198, gnl|Hg17|chr17 (71773050-71773279) |
| |
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277-892, gnl|bosTau2|chr19 (49372566-49371934) |
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277-892, gnl|Hg17|chr17 (71777864-71778489) |
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277-892, gnl|Mm7|chr11 (116547032-116547652) |
| |
|
1235-1379, gnl|bosTau2|chr19 (49371629-49371477) |
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1235-1379, gnl|canFam2|chr9 (7409251-7408981) |
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1235-1379, gnl|echTel1|scaffold_324582 (3234-3433) |
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1235-1379, gnl|hg17|chr17 (71778736-71779000) |
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1235-1379, gnl|Hg17|chr17 (71778786-71778970) |
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1235-1379, gnl|loxAfr1|scaffold_32136 (9098-8826) |
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1235-1379, gnl|mm7|chr11 (116547897-116548143) |
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1235-1379, gnl|Mm7|chr11 (116547958-116548114) |
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1235-1379, gnl|monDom2|scaffold_18 (34343524-34343793) |
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1235-1379, gnl|panTro1|chr19 (75140392-75140654) |
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1235-1379, gnl|rheMac2|chr16 (71613888-71614132) |
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1235-1379, gnl|rn3|chr10 (106562027-106562295) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-198, gnl|bosTau2|chr19 (49377003-49376804) |
|
1-198, gnl|Hg17|chr17 (71773050-71773279) |
| |
|
277-892, gnl|bosTau2|chr19 (49372566-49371934) |
|
277-892, gnl|Hg17|chr17 (71777864-71778489) |
|
277-892, gnl|Mm7|chr11 (116547032-116547652) |
| |
|
1235-1379, gnl|bosTau2|chr19 (49371629-49371477) |
|
1235-1379, gnl|canFam2|chr9 (7409251-7408981) |
|
1235-1379, gnl|echTel1|scaffold_324582 (3234-3433) |
|
1235-1379, gnl|hg17|chr17 (71778736-71779000) |
|
1235-1379, gnl|Hg17|chr17 (71778786-71778970) |
|
1235-1379, gnl|loxAfr1|scaffold_32136 (9098-8826) |
|
1235-1379, gnl|mm7|chr11 (116547897-116548143) |
|
1235-1379, gnl|Mm7|chr11 (116547958-116548114) |
|
1235-1379, gnl|monDom2|scaffold_18 (34343524-34343793) |
|
1235-1379, gnl|panTro1|chr19 (75140392-75140654) |
|
1235-1379, gnl|rheMac2|chr16 (71613888-71614132) |
|
1235-1379, gnl|rn3|chr10 (106562027-106562295) |
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cag (0.755972) |
|
jej (0.692452) |
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pla (0.66836) |
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clu (0.358938) |
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ill (0.351185) |
|
fce (0.271592) |
|
fty (0.17584) |
|
fbs (0.175346) |
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nje (0.16592) |
|
nco (0.161734) |
|
pty (0.142714) |
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hlv (0.139256) |
|
ese (0.126502) |
|
ebs (0.118301) |
|
ecc (0.115035) |
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jca (0.11396) |
|
eje (0.0988338) |
|
cag (0.755972) |
|
jej (0.692452) |
|
pla (0.66836) |
|
clu (0.358938) |
|
ill (0.351185) |
|
fce (0.271592) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
nje (0.16592) |
|
nco (0.161734) |
|
pty (0.142714) |
|
hlv (0.139256) |
|
ese (0.126502) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
jca (0.11396) |
|
eje (0.0988338) |
