Non-Coding RNA Search

Ss1.1-Pig4-TMW8056N11.5

Sequence:


               
               TACCTTTTATAGTCTCTTCAAAGCAAATCATTGATGATTCTTTGATGCAGCATTAACTGA
AGTGTTCTACAGTTTGTCAAGATAATGTTCAGTGCTTGGCACTTAAATAACATTTTTTGC
AAGAACTCCAAAGCACAGTATCGAATGCCTTAACCAAGTGCATTCTGGGGAAGTTTGCTT
AACTCATTATGTTGCTTTTCTGCAGCATTTTATGATTTGTCACTCATAAATAAGAGTTAT
ATTCTTTGGTAATTTATTGTCATTTATAGCAAGACTCAGGAATGGGGGGTATCATTTTGA
TTGACTGATTTGTTAGATTTTTCAGCCTGTTTCCTTAACCCAGAGGTGACAATCTGGTCA
TATAAAAGTAGATCTTCATTCATTTCATACCATGGACACCATCCTGATAAATTCAGAGTA
TATGCAAGTGTTATGTGAGTCCACTTTCTTTACATGACAGCATCTTTTAATGCAGTGAAT
ATATCAGAATTACTTGTCTGGGAGTTTAAAGCTCCTAGGAAATTAAAACCTGTAAGACAC
TTGAAGATCTCCACAATTTTAATGTATACAAAGCTATGTTAATGTGTAATATTTCATTAC
AATTCAAATTCACTCCAAAAATAAAAGGCCAATAGGATTAGGGACTCAGTGGTAGTTTGG
AGTCTCCCCTAGCACATATCCCTTCTAATGGGATGATCTGTTGACATATCTCCCAGCCTC
TTTGTTTTTGCTTCTGTACAACACAGTGAGTGGATGGCCCTTCAGCTTTTTCCCTCTTGG
CCAGACATGCAGTCTTGCCTTTAGATATTGCAGAGACAACATTCACAGCATGTCTTTAAC
TCTTCCAGGATTTGCAAGAATCAAATTGCTCAACAGTATGTATGTTTAGAGGGGTTAGAC
TCCTTTAAAATTTTTTGGATACCTAACCTCCTACTTAAATCTGTTCTGACAGTGTCAGAA
CATCCCACTCCCTTCCCCTCCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACCTTTTATAGTCTCTTCAAAGCAAATCATTGATGATTCTTTGATGCAGCATTAACTGA
AGTGTTCTACAGTTTGTCAAGATAATGTTCAGTGCTTGGCACTTAAATAACATTTTTTGC
AAGAACTCCAAAGCACAGTATCGAATGCCTTAACCAAGTGCATTCTGGGGAAGTTTGCTT
AACTCATTATGTTGCTTTTCTGCAGCATTTTATGATTTGTCACTCATAAATAAGAGTTAT
ATTCTTTGGTAATTTATTGTCATTTATAGCAAGACTCAGGAATGGGGGGTATCATTTTGA
TTGACTGATTTGTTAGATTTTTCAGCCTGTTTCCTTAACCCAGAGGTGACAATCTGGTCA
TATAAAAGTAGATCTTCATTCATTTCATACCATGGACACCATCCTGATAAATTCAGAGTA
TATGCAAGTGTTATGTGAGTCCACTTTCTTTACATGACAGCATCTTTTAATGCAGTGAAT
ATATCAGAATTACTTGTCTGGGAGTTTAAAGCTCCTAGGAAATTAAAACCTGTAAGACAC
TTGAAGATCTCCACAATTTTAATGTATACAAAGCTATGTTAATGTGTAATATTTCATTAC
AATTCAAATTCACTCCAAAAATAAAAGGCCAATAGGATTAGGGACTCAGTGGTAGTTTGG
AGTCTCCCCTAGCACATATCCCTTCTAATGGGATGATCTGTTGACATATCTCCCAGCCTC
TTTGTTTTTGCTTCTGTACAACACAGTGAGTGGATGGCCCTTCAGCTTTTTCCCTCTTGG
CCAGACATGCAGTCTTGCCTTTAGATATTGCAGAGACAACATTCACAGCATGTCTTTAAC
TCTTCCAGGATTTGCAAGAATCAAATTGCTCAACAGTATGTATGTTTAGAGGGGTTAGAC
TCCTTTAAAATTTTTTGGATACCTAACCTCCTACTTAAATCTGTTCTGACAGTGTCAGAA
CATCCCACTCCCTTCCCCTCCCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               701-820, - strand, RNAz p=0.82635

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               701-820, - strand, RNAz p=0.82635

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-984, gnl|bosTau2|chr22 (38366611-38367599)
               

               
               3-984, gnl|Hg17|chr3 (50113625-50114618)
               

               
               3-984, gnl|Mm7|chr9 (107490875-107489562)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-984, gnl|bosTau2|chr22 (38366611-38367599)
               

               
               3-984, gnl|Hg17|chr3 (50113625-50114618)
               

               
               3-984, gnl|Mm7|chr9 (107490875-107489562)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	3-984, gnl\|bosTau2\|chr22 (38366611-38367599)
	3-984, gnl\|Hg17\|chr3 (50113625-50114618)
	3-984, gnl\|Mm7\|chr9 (107490875-107489562)