Non-Coding RNA Search

Ss1.1-Pig4-TMW8056N13.5

Sequence:


               
               GTATTCCAGGCAGTCAGATGCCTCCTCAGCCACCTGGGAGCCAGTCAGAATCCAGTTCCC
ATCCTGCCTTGAGCCAGTCCCCAATGCCGCAGGAAAGAGGTTTTATGGCAGGCACACAAA
GAAACCCTCAGATGTCTCAGTATGGAGCTCAGCAGACAGGACCATCCATGTCGCCTCATC
CTTCTCCTGGAGGCCAGATGCATCCCGGAATCAGTAGCTTTCAGCAGAGTAACTCAAGTG
GGACTTACGGTCCACAGATGAGCCAGTATGGACCACTAGGTAACTACTCCAGACCCCCAA
CGTATAGTGGGGTGCCCAGTGCAAGCTACAGCGGCCCAGGGCCCGGCATGGGCATCAATG
CCAACAACCAGATGCATGGACAAGGGCCAAGCCAGCCATGTGGTGCTCTGCCCCTGGGAC
GAATGCCATCAGCTGGGATGCAGAACAGGCCATTTCCTGGAAATATGAGCAGCATGACCC
CCAGCTCTCCTGGCATGTCTCAGCAGGGAGGGCCAGGAATGGGGCCACCAATGCCAACCG
TGAACCGTAAGGCACAGGAGGCAGCTGCCGCAGTGATGCAGGCCGCTGCAAACTCGGCCC
AAAGCAGGTATGCCGTCGGGGCGGGCGGTCTGGGTGTGGACGTGTGCGCATGTGCAGAGC
CCGCGTGCGTCCGCCCTGCATCACGTCGGGTGGAGAGCCACACGCGTGATTTTGCTTGGC
CGTCGCCTTTGTGTTAAATATAGGCTGTACTGTAAAGGGCAGAAATGTACATCATAGGCT
ACCTTCTGTGAGACACGGAGGAGGGAATCTGAGTGCTGGGCAAAGTCAGACCTGGGAGGT
GCTCGGAAGCGGCTGTGCACAGTCACCACACCAAACAACCCAGAGCCAGCGGCACAGGGA
GTGTCTGTGTGGTGCCATCCGACACAGTGAGGTCTAGGTGGGAAATTCTCAAGCCTAAAA
ACTGGCTCAAATCTTAAAACATTCAAGAAGAACATCTCCCCTTTTTTTCACCCCGCCATA
AAAATCTTTATAAAATAGAAACTCTGTATGTGCACGTGTGTGTATTGTGTGTGTTTGTCT
AAATGTCCATGTCTGAGAGTTCTTACTTCATGTTGTGTTGTGTTTCATTTTTCTGGGCAT
ACCTCTCTGACCTAATCAAAAGGTGGTTAATGAAGCAAAGATCCTATTTCAGAAAGTTTA
AGGTGATAGAGCAAGGCTTTAGCCTTAGCTGTTAACTCGTTTTTAATCCTGAATTCTAAA
AATGAATTCTCAGAGTAAATTCTTGACCTGTATAAAAATGACAGAATTAAAAATATATGA
AGCAGACCCCTAGCCTGGCAACTTCCATATGCCGCAGGTGCGGCCCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTATTCCAGGCAGTCAGATGCCTCCTCAGCCACCTGGGAGCCAGTCAGAATCCAGTTCCC
ATCCTGCCTTGAGCCAGTCCCCAATGCCGCAGGAAAGAGGTTTTATGGCAGGCACACAAA
GAAACCCTCAGATGTCTCAGTATGGAGCTCAGCAGACAGGACCATCCATGTCGCCTCATC
CTTCTCCTGGAGGCCAGATGCATCCCGGAATCAGTAGCTTTCAGCAGAGTAACTCAAGTG
GGACTTACGGTCCACAGATGAGCCAGTATGGACCACTAGGTAACTACTCCAGACCCCCAA
CGTATAGTGGGGTGCCCAGTGCAAGCTACAGCGGCCCAGGGCCCGGCATGGGCATCAATG
CCAACAACCAGATGCATGGACAAGGGCCAAGCCAGCCATGTGGTGCTCTGCCCCTGGGAC
GAATGCCATCAGCTGGGATGCAGAACAGGCCATTTCCTGGAAATATGAGCAGCATGACCC
CCAGCTCTCCTGGCATGTCTCAGCAGGGAGGGCCAGGAATGGGGCCACCAATGCCAACCG
TGAACCGTAAGGCACAGGAGGCAGCTGCCGCAGTGATGCAGGCCGCTGCAAACTCGGCCC
AAAGCAGGTATGCCGTCGGGGCGGGCGGTCTGGGTGTGGACGTGTGCGCATGTGCAGAGC
CCGCGTGCGTCCGCCCTGCATCACGTCGGGTGGAGAGCCACACGCGTGATTTTGCTTGGC
CGTCGCCTTTGTGTTAAATATAGGCTGTACTGTAAAGGGCAGAAATGTACATCATAGGCT
ACCTTCTGTGAGACACGGAGGAGGGAATCTGAGTGCTGGGCAAAGTCAGACCTGGGAGGT
GCTCGGAAGCGGCTGTGCACAGTCACCACACCAAACAACCCAGAGCCAGCGGCACAGGGA
GTGTCTGTGTGGTGCCATCCGACACAGTGAGGTCTAGGTGGGAAATTCTCAAGCCTAAAA
ACTGGCTCAAATCTTAAAACATTCAAGAAGAACATCTCCCCTTTTTTTCACCCCGCCATA
AAAATCTTTATAAAATAGAAACTCTGTATGTGCACGTGTGTGTATTGTGTGTGTTTGTCT
AAATGTCCATGTCTGAGAGTTCTTACTTCATGTTGTGTTGTGTTTCATTTTTCTGGGCAT
ACCTCTCTGACCTAATCAAAAGGTGGTTAATGAAGCAAAGATCCTATTTCAGAAAGTTTA
AGGTGATAGAGCAAGGCTTTAGCCTTAGCTGTTAACTCGTTTTTAATCCTGAATTCTAAA
AATGAATTCTCAGAGTAAATTCTTGACCTGTATAAAAATGACAGAATTAAAAATATATGA
AGCAGACCCCTAGCCTGGCAACTTCCATATGCCGCAGGTGCGGCCCTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|18676708|dbj|BAB85006.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|18676708|dbj|BAB85006.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               277-395, - strand, RNAz p=0.687208
               

               
               476-595, - strand, RNAz p=0.913651

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               277-395, - strand, RNAz p=0.687208
               

               
               476-595, - strand, RNAz p=0.913651

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               277-1324, gnl|bosTau2|chr9 (57206359-57207384)
               

               
               277-1324, gnl|Hg17|chr6 (157561868-157562920)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               277-1324, gnl|bosTau2|chr9 (57206359-57207384)
               

               
               277-1324, gnl|Hg17|chr6 (157561868-157562920)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               thg (0.126791)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)

	277-395, - strand, RNAz p=0.687208
	476-595, - strand, RNAz p=0.913651

	277-1324, gnl\|bosTau2\|chr9 (57206359-57207384)
	277-1324, gnl\|Hg17\|chr6 (157561868-157562920)