Non-Coding RNA Search

Ss1.1-Pig4-TMW8056N20.3

Sequence:


               
               AGCAGCAGCCCCCAGGTAGTAACAGACGTGGATGGAATACCACTAACCAGAGATACTCCA
ATGTTATCCAGCCATCCAGTTTCTCCAAATCCACACCATGGGGGGGCAGCAGAGATCAAG
AAAAGCCATCTTTTGGTTCTTTTGATTCTGGAGCATCAACTAGCAGGAATAGGGGTTTTG
GATTGTCTCAGAACCCATTTGCTTCATCTAGCTCTGATGGTGATGGGCAAAAAGATGAAA
AGAAACTTCTGGAAGAAATTGTGAAAGACATGGAGGTTTGGGAATCATCAGGGCAGTGGA
TGTTTTCTGTATATTCACCAATGAAAAAGAAACTGAATATTTCAGGTTTTACAGACATTT
CACCAGAGGAGTTGAGACTTGAATACCATAACTTCTTAACCAGCAATAACTTACAGAGTT
ATCTAAATTCCATACAACACTTAATAAATCAGTGGAGGAACAGGGTAAATGAACTGAAAA
ATCTAAATTTGTCAACTAAATTAGCTTTGCTCTCTGATGTAAAAGATGGAGTAAAGCAAG
CAGCACCTGCATTTGGATTTGGCAGTAGTCAGGCAGTAACATTTGGGTCACCAGGTTTTC
CAGTGAATAGCAACAGCAGTTGTAGTGCTCAGAATTTTAGTTTTAAACCAAGGTCTTCAT
TTGCTGCTGCCCCCTCTGGAAGTCCTTCTGTGTTTGGGAGTACTCCGGCATTTGGAGCCA
CACCCTCTGCCAGTTCTGCCATCAGCGCTTCTGCCCCAACTTTTGGACTTGGGAAGCCCG
AAATCACATCTGCTGCTTCATTTTCGTTTAAAACCCCTGCAGCTTCTGGTTTTGGATCAT
CCGGATTTTCAGGATTTCCAGCTCCAATGGCAGCAGACCCTGTTGCCCCAGCCTTTGGAA
GTGGCAGTTCTGTGGCTGGTTTTGGTAGTCCTGGCTCACATTCTCATGCTGCTTTTTCCA
AGTCATCCAGTGACACCTTTGGAAATAGCAGCCTATCCACCTCTCTCCCAGTCTCACATG
GCACAACAGATAATGTATTATTCACACCCAAGGATCAACTAACAGTGGAAGAACTAGAAC
AATTTCAATCTAAGAAATTCACTTTGGGAAAAATTCCCTTAAAGCCACCGCCTGTGGAAC
TCATAAATATTTAAAAGGGCAATTTTAAATATAGAAAAGAACAGTTTTTAAAATTGTTTT
GAGTGGTTCATATGAAAGAGCAAATATATATACACATTTAAATTTATAAGAAATGTAAAC
TTTTAATAACATTAGTTTTTAAATTTAACATTTTCCCCTTGAACCTAACTATTTAAATGG
AACATAAAAAATACTCAAGAACAGATTTTTTTTAACTATTATTATGAATGAAACTGAAAA
AATGATCAATCCACACTGAATAAAGTACTTTTCTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCAGCAGCCCCCAGGTAGTAACAGACGTGGATGGAATACCACTAACCAGAGATACTCCA
ATGTTATCCAGCCATCCAGTTTCTCCAAATCCACACCATGGGGGGGCAGCAGAGATCAAG
AAAAGCCATCTTTTGGTTCTTTTGATTCTGGAGCATCAACTAGCAGGAATAGGGGTTTTG
GATTGTCTCAGAACCCATTTGCTTCATCTAGCTCTGATGGTGATGGGCAAAAAGATGAAA
AGAAACTTCTGGAAGAAATTGTGAAAGACATGGAGGTTTGGGAATCATCAGGGCAGTGGA
TGTTTTCTGTATATTCACCAATGAAAAAGAAACTGAATATTTCAGGTTTTACAGACATTT
CACCAGAGGAGTTGAGACTTGAATACCATAACTTCTTAACCAGCAATAACTTACAGAGTT
ATCTAAATTCCATACAACACTTAATAAATCAGTGGAGGAACAGGGTAAATGAACTGAAAA
ATCTAAATTTGTCAACTAAATTAGCTTTGCTCTCTGATGTAAAAGATGGAGTAAAGCAAG
CAGCACCTGCATTTGGATTTGGCAGTAGTCAGGCAGTAACATTTGGGTCACCAGGTTTTC
CAGTGAATAGCAACAGCAGTTGTAGTGCTCAGAATTTTAGTTTTAAACCAAGGTCTTCAT
TTGCTGCTGCCCCCTCTGGAAGTCCTTCTGTGTTTGGGAGTACTCCGGCATTTGGAGCCA
CACCCTCTGCCAGTTCTGCCATCAGCGCTTCTGCCCCAACTTTTGGACTTGGGAAGCCCG
AAATCACATCTGCTGCTTCATTTTCGTTTAAAACCCCTGCAGCTTCTGGTTTTGGATCAT
CCGGATTTTCAGGATTTCCAGCTCCAATGGCAGCAGACCCTGTTGCCCCAGCCTTTGGAA
GTGGCAGTTCTGTGGCTGGTTTTGGTAGTCCTGGCTCACATTCTCATGCTGCTTTTTCCA
AGTCATCCAGTGACACCTTTGGAAATAGCAGCCTATCCACCTCTCTCCCAGTCTCACATG
GCACAACAGATAATGTATTATTCACACCCAAGGATCAACTAACAGTGGAAGAACTAGAAC
AATTTCAATCTAAGAAATTCACTTTGGGAAAAATTCCCTTAAAGCCACCGCCTGTGGAAC
TCATAAATATTTAAAAGGGCAATTTTAAATATAGAAAAGAACAGTTTTTAAAATTGTTTT
GAGTGGTTCATATGAAAGAGCAAATATATATACACATTTAAATTTATAAGAAATGTAAAC
TTTTAATAACATTAGTTTTTAAATTTAACATTTTCCCCTTGAACCTAACTATTTAAATGG
AACATAAAAAATACTCAAGAACAGATTTTTTTTAACTATTATTATGAATGAAACTGAAAA
AATGATCAATCCACACTGAATAAAGTACTTTTCTTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26345876|dbj|BAC36589.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26345876|dbj|BAC36589.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               593-711, - strand, RNAz p=0.973796
               

               
               752-871, - strand, RNAz p=0.735418
               

               
               1094-1212, + strand, RNAz p=0.822751

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               593-711, - strand, RNAz p=0.973796
               

               
               752-871, - strand, RNAz p=0.735418
               

               
               1094-1212, + strand, RNAz p=0.822751

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK124359, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK124359, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               13-255, gnl|bosTau2|chr4 (11804593-11804829)
               

               
               13-255, gnl|Hg17|chr7 (22997926-22998162)
               

               
               13-255, gnl|Mm7|chr5 (23207833-23208063)
               


               
               593-1241, gnl|bosTau2|chr4 (11817130-11816463)
               

               
               593-1241, gnl|Hg17|chr7 (23013025-23013661)
               

               
               593-1241, gnl|Mm7|chr5 (23222399-23222994)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-255, gnl|bosTau2|chr4 (11804593-11804829)
               

               
               13-255, gnl|Hg17|chr7 (22997926-22998162)
               

               
               13-255, gnl|Mm7|chr5 (23207833-23208063)
               


               
               593-1241, gnl|bosTau2|chr4 (11817130-11816463)
               

               
               593-1241, gnl|Hg17|chr7 (23013025-23013661)
               

               
               593-1241, gnl|Mm7|chr5 (23222399-23222994)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               vin (0.332557)
               

               
               ste (0.270416)
               

               
               sug (0.127291)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               ste (0.270416)
               

               
               sug (0.127291)

	593-711, - strand, RNAz p=0.973796
	752-871, - strand, RNAz p=0.735418
	1094-1212, + strand, RNAz p=0.822751

	13-255, gnl\|bosTau2\|chr4 (11804593-11804829)
	13-255, gnl\|Hg17\|chr7 (22997926-22998162)
	13-255, gnl\|Mm7\|chr5 (23207833-23208063)

	593-1241, gnl\|bosTau2\|chr4 (11817130-11816463)
	593-1241, gnl\|Hg17\|chr7 (23013025-23013661)
	593-1241, gnl\|Mm7\|chr5 (23222399-23222994)